Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0241 ATGGCCCATCCTTCTTCTGCCGGCCCATTTGTTCCTTCCTTTTTTTCAAAAGCCCCTCTTCCTGACTTTCCCCCTCCCATACCGGTCCACAACCTCCTCAATCTTCCTCCGCTCCCTCACCTCTCCGCCACAATGCACTCCTCCGCCTGCGACCTCGCCGGCGACATTGATAATCTCAGCCGCAAACACACCACCACCGCCACCGCCACAATCCATTTATCCGTTGACAAACTCTCCGGGGACTTCGACAATCTCAATTGCAAACATACCGCAGCCACTGTCGCGATTCCATCATCCGCCGCCGACTCCTCCGGCCACTCTCCCTCCACCGGAACCGGTACAAATCAATCATCCGCAGATGATCTTTCGGACGACTTCAATAATCTCAGTTGCAACACTAACACCACAGGCTCTAGCACAAATCAGTCATCCGCCGACGAACTCGGCGGCGACGTAGACAATCTCAGTTGCAACACTACAACCACTGGCACCGGCACAAATCAATCATCTGCCGACGACCTCGCCGACGACGTCGACAATCTCGATTGCAACACTATAGCCACCTCAACCGGCAAAAAAATGCATAGTTCACCTTCACCATCAAGCAAACCCAATGCACCATCATCGGACCCTTGCAGGGACGCAATCCATGGGGTCGGGTTGAAGAGGACGCTGGGCATGGGCGACATCCGGTTGGTTCGGCGCGTGGGGAGCGGCGACATTGGAAGCGTGTACGTGGCTGAGGTGAAGGGCTGGTTGGAGGGAGGTCGTGTGTTTGCGGCGAAGGTGATGGACAAAGAAGAGCTGATAAGTAGGAAGAAGGAAGGGAGGGCGAGGATAGAGAGGGAAATACTGGAAATGATGGACCATCCGTTCTTGCCCACGCTTTACGCCTCGATCGAGTCGTCACGGTGGTCCTGCTTGCTCACGGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGCCAACCCCTTCAGCGCTTCCACGAAGATGCCGTACGATTCTATGCATCAGAAGTAGTCATTGCTTTGGAGTACCTGCACATGATGGGGATAATCTACCGTGACTTAAAGCCCGAAAACGTGCTCATAAGATCGGACGGTCATATAATGCTCACAGATTTCGATCTCTCATTGAAAAGCCATGATTCCTCCTCATCAACGGCTCAGATTGTAGTTGACCACCACTCTTCAAATCCAACACACGCAGACGAATATCCCGCGGACCAATCGTCCTCCGCCATGTCATCCTGCATCCTGCCCAATTGCATCGTGCCAGCTGTCTCCTGCTTGCACCACAAGCGTAATCGCAAGAAGAGATCCACTCGTTGTGGGTCCCTCGAGATCGTAGCCGAACCAATAGAAATTCGGTCCATGTCTTTTGTTGGGACCCACGAGTACTTGGCGCCGGAAATTATTTCCGGCGAGGGACACGGCAACGCCGTTGATTGGTGGACACTCGGGGTGTTCATGTATGAGATGCTGTACGGAATCACACCCTTCAAGGGGCTTGACCACGAGCTAACATTGGCTAACATAGTGGCTCGAGCCCTTGAGTTCCCTAAGGAGCCCGCGGTTGCTGAGCCAGCCAGGGATTTGATTGCAAAACTTCTGGTGAAGGACCCCACAAAACGATTGGGGTCCACAATGGGGGCCACAGCCATAAAGCACCATCCTTATTTCAATGGGGTCAATTGGGCACTGTTAAGGTGTGCATCGCCGCCGTACACGCCGCCGCCGGCAGCCGCGTACAAGGACTTTGTTCAACTCCATAATGCTACAACCAATGAAGTAGATTACTACTAA 1812 0.5397 MAHPSSAGPFVPSFFSKAPLPDFPPPIPVHNLLNLPPLPHLSATMHSSACDLAGDIDNLSRKHTTTATATIHLSVDKLSGDFDNLNCKHTAATVAIPSSAADSSGHSPSTGTGTNQSSADDLSDDFNNLSCNTNTTGSSTNQSSADELGGDVDNLSCNTTTTGTGTNQSSADDLADDVDNLDCNTIATSTGKKMHSSPSPSSKPNAPSSDPCRDAIHGVGLKRTLGMGDIRLVRRVGSGDIGSVYVAEVKGWLEGGRVFAAKVMDKEELISRKKEGRARIEREILEMMDHPFLPTLYASIESSRWSCLLTEFCPGGDLHVLRQRQPLQRFHEDAVRFYASEVVIALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKSHDSSSSTAQIVVDHHSSNPTHADEYPADQSSSAMSSCILPNCIVPAVSCLHHKRNRKKRSTRCGSLEIVAEPIEIRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGVFMYEMLYGITPFKGLDHELTLANIVARALEFPKEPAVAEPARDLIAKLLVKDPTKRLGSTMGATAIKHHPYFNGVNWALLRCASPPYTPPPAAAYKDFVQLHNATTNEVDYY 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0241 603 MobiDBLite consensus disorder prediction 98 174 - -
Dere01g0241 603 Pfam Protein kinase domain 460 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0241 603 Pfam Protein kinase domain 233 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0241 603 SMART serkin_6 230 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0241 603 MobiDBLite consensus disorder prediction 182 208 - -
Dere01g0241 603 MobiDBLite consensus disorder prediction 98 215 - -
Dere01g0241 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Dere01g0241 603 Gene3D Transferase(Phosphotransferase) domain 1 317 392 - -
Dere01g0241 603 Gene3D Transferase(Phosphotransferase) domain 1 459 581 - -
Dere01g0241 603 FunFam serine/threonine-protein kinase D6PK-like 458 581 - -
Dere01g0241 603 CDD STKc_phototropin_like 229 573 - -
Dere01g0241 603 PANTHER FLIPPASE KINASE 1-RELATED 116 583 - -
Dere01g0241 603 Gene3D Phosphorylase Kinase; domain 1 231 316 - -
Dere01g0241 603 FunFam Serine/threonine-protein kinase OXI1 317 385 - -
Dere01g0241 603 SUPERFAMILY Protein kinase-like (PK-like) 217 589 IPR011009 -
Dere01g0241 603 ProSiteProfiles Protein kinase domain profile. 230 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0241 603 Gene3D Phosphorylase Kinase; domain 1 583 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0241 Dere-ChrDere01 6721611 6725152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0241 235 573 AGC Kinase Gene Family AT3G44610 66.097 2.18e-171 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Dere01g0241 Pkinase 1.9e-33 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0241 01 6721611 6725152 Dere02g1152 02 11051248 11054673 CCT
Dere02g1152 02 11051248 11054673 Dere01g0241 01 6721611 6725152 ECH
Dere01g0241 01 6721611 6725152 Dere01g0241 01 6721611 6725152 ECH