Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0238 ATGGGAATGTATAGCCTCAGACATTCTTCGCGGCAAGCAGGGGAGGCTTTCTCTCAAGGCCAGTGGCTTGTCAGCAATAGCATGCAACAGATGGTCTTCGCCATGGCCAAGCTCGCGAATCGTGAAGGATTTGTCCGCCAGGCTGATAACTTGAGGCAACAAACCCTTCACCACAATGAGGCTGGCAGAACGAAGCAGAGAAGGAGTAGGCCGAGAGAAGCCACGAATCGAGAGGAGGAGAGAAAGCTGATGAAGGAGGAAAATGGCGGAGCAATGCGAAAAGGGAGGAGAGCCGATGTGAACCGAGGAAGAAGACATAATGACAGACACAGAAGCATAGAGGAAAGAGAAAGCTCTGCCACCTCTGTTATCTCAGCCAAAAATAGAGCTTTGGATCTCTCCAATCTGCGTAAAGGGCAGCTTCTGATCCAGCTATGGTTAAAGGAGAGTGATAGCATATGGCCTGCTCGAAAGCATGTTGTTGCATGCGCTGTAGTTTGCCGGTCTTGGAGGAACATGTGCAAAGAAATTGTGAAGAGCCCAGAATCCTGTGCCTTGCTTTCTTCTACGCTTGATACTGATGGCATTGTTCTTGGCCAACTCGAGCAGCTTCCTTGCTCCCTTGAGGATTTGTTCTGTAGTATCTCCTTCTCAAAGTCTCTTGATCACTCTATTGAGTTCAGTAGTGCAAGATTTTCTGAGATTAGGGCATCCTGTAGTATCGAGGATGAGGAAGGCAAGATAAGACCCTTGATCCTAAAAAATAAACCTCTAAGATGGCATGAACAGTTGCAATCTGCTGGCACACCCACACCATCTCGACCAGCCCCACCAGATCATGATAAGATAATTCTGCAGTTTGGCAAAGTTAGGAAAGATATGTTCACCATGGATTATCGGTATCCTCTATCTGCTTTCCAGGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGCGAATAG 972 0.4733 MGMYSLRHSSRQAGEAFSQGQWLVSNSMQQMVFAMAKLANREGFVRQADNLRQQTLHHNEAGRTKQRRSRPREATNREEERKLMKEENGGAMRKGRRADVNRGRRHNDRHRSIEERESSATSVISAKNRALDLSNLRKGQLLIQLWLKESDSIWPARKHVVACAVVCRSWRNMCKEIVKSPESCALLSSTLDTDGIVLGQLEQLPCSLEDLFCSISFSKSLDHSIEFSSARFSEIRASCSIEDEEGKIRPLILKNKPLRWHEQLQSAGTPTPSRPAPPDHDKIILQFGKVRKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0238 323 MobiDBLite consensus disorder prediction 56 117 - -
Dere01g0238 323 Pfam Tub family 276 318 IPR000007 -
Dere01g0238 323 ProSitePatterns Tub family signature 2. 308 323 IPR018066 -
Dere01g0238 323 Gene3D Tubby Protein; Chain A 219 323 IPR025659 -
Dere01g0238 323 SUPERFAMILY Tubby C-terminal domain-like 244 323 IPR025659 -
Dere01g0238 323 MobiDBLite consensus disorder prediction 52 119 - -
Dere01g0238 323 PANTHER TUBBY-RELATED 279 321 - -
Dere01g0238 323 Pfam F-box domain 158 179 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0238 Dere-ChrDere01 6678547 6684808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0238 189 323 TUB Transcription Factor Family AT1G25280 55.233 1.99e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere01g0238 Tub 1.2e-22 CL0395