Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0232 ATGGCTGCAGAAGATTCAAGTCGAGTTGTTCCATTGAATGATTATCACAATATTGGAATCATGGCTCACATAGATGCTAGAAAGACAACTACAACTGAACGAATTCTCTACCATACAGGAAGAAACTACAAAAGTGGAGAAGTACACGAAGGAATGGCTACAATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACCATAACTTCCGCTGCAACCACTACATTTTGGGATAAGCACTGGATCAACATAATTGATACTCCCGGTCATGTTGACTTCACCCTAGAAGTGGAGCGAGCTCTTAAGGTGTTGGATGGAGCTATATGCTTGTTTAATAGTGTTGCTGGTGTGGAACCACAATCGGAAACTGTCTGGAGACAAGCTAATAAATATGGGGTCCCACGAATTTCTTTCAAAAATAAGGGGGTCCAACCACTACTTGATGCTGTTGTGGATTATCTGCCATCACCACTTGACTTGCCACCAATGAAAGGAACTGACCCTGAAAACCCAGAAGTGACACTTGAAAGAAAAGCAATTGATGATGAACCATTTTTTGGACTAGCGTTTAAGATCATGAGCGATCCATTTGTTAGTTCCCTTACATTTGTTAGGGTGTACGCTGGAAAGCTTTCAGCAAGGGAGGATGTTAAGGTAGCTTTAACGGGTGATATTATAGCTCTGGCAGGTTTAAAAGATACAATTACAGGTGAAACATTGTGTGACCCTGACAATCCTATTGTGCTTAAGCGTATGGACTTTCCTGATCCTGTGATAAAGGTTGCAATTGAACCCAAAACTAAAGCTGATGTTGACAAGATGGCCAATGGTTTAATTCAGCTTGCCCGAGAAGACCCTTCATTCCACTTCTCTGGGGATGAAGAGATTAACCAGATGGTGATTGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTTGACCGACTCAAGAGAGAATTTAAGGTGGAAGCTAATGTTGGTGCACCCCAAGTAAACTACAGAGAAAGCATTTCCAAAGTCTCAAAAGTGAAGTATGTGCACAAGAAACAGTCGAGTGGACAAGGTCAATTTGCTGCTATCACTATTCAGTTTGAACCCTTGGAGCCAGGAGTGATGAAAGGATTGGAGGAGTGTATGAGCAATGGGGTACTTGCTGGATTTCCAGTTGTTGATGTACGTGCAGTCTTTGTAGATGGTTTCTACCATGATGTGGATTCAAGTGTCCTGGCATTCCAATTGGCAGCAAGAGGAGCTCTTCGGGAAAGAATGAGAAAAGCTGGACCTAGGATACTTGAACCTGTGATGAAAGTTGAAGTGGTTACTCCGGAAGATCATCTAGGAGATGTAATTGGTGATTTCAACTTAAGAAGAGGCCAGATCAACAGCTTCGGTGACAAGCCTAGTGGCCTTAAGAAAATGATTTTCTTGGACACTGCTCAGAGAATGGCTAGCACATTGCGGCCATACTGGTCAGAGGCAACAACAGATCATGCCAGGGTTGTTCAAGTTGTGCCAGACATGCTTGAAATTGTACCCTCGGGAACTTCAAAGGGGAATGGAGTCAAAATGCTTCTAAATCATTTGGGGATTACTACTAAGGAGGGACACATGGTCTTAGGCAAAGATCTGGTGTTGGTGTGGATTGATCCTTTGCGACATGGATAA 1665 0.4282 MAAEDSSRVVPLNDYHNIGIMAHIDARKTTTTERILYHTGRNYKSGEVHEGMATMDWMEQEQERGITITSAATTTFWDKHWINIIDTPGHVDFTLEVERALKVLDGAICLFNSVAGVEPQSETVWRQANKYGVPRISFKNKGVQPLLDAVVDYLPSPLDLPPMKGTDPENPEVTLERKAIDDEPFFGLAFKIMSDPFVSSLTFVRVYAGKLSAREDVKVALTGDIIALAGLKDTITGETLCDPDNPIVLKRMDFPDPVIKVAIEPKTKADVDKMANGLIQLAREDPSFHFSGDEEINQMVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSKVKYVHKKQSSGQGQFAAITIQFEPLEPGVMKGLEECMSNGVLAGFPVVDVRAVFVDGFYHDVDSSVLAFQLAARGALRERMRKAGPRILEPVMKVEVVTPEDHLGDVIGDFNLRRGQINSFGDKPSGLKKMIFLDTAQRMASTLRPYWSEATTDHARVVQVVPDMLEIVPSGTSKGNGVKMLLNHLGITTKEGHMVLGKDLVLVWIDPLRHG 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0232 554 Gene3D - 469 513 - -
Dere01g0232 554 Gene3D - 335 369 IPR014721 -
Dere01g0232 554 Pfam haloacid dehalogenase-like hydrolase 468 534 - -
Dere01g0232 554 Gene3D Translation factors 167 216 - -
Dere01g0232 554 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 137 217 - -
Dere01g0232 554 SUPERFAMILY HAD-like 470 534 IPR036412 -
Dere01g0232 554 Gene3D Translation factors 217 257 - -
Dere01g0232 554 Gene3D - 514 534 IPR023214 -
Dere01g0232 554 Pfam Elongation factor G C-terminus 429 472 IPR000640 -
Dere01g0232 554 SMART EFG_IV_2 330 427 IPR005517 GO:0005525
Dere01g0232 554 Pfam Elongation factor G, domain IV 369 426 IPR005517 GO:0005525
Dere01g0232 554 Pfam Elongation Factor G, domain III 254 327 IPR041095 -
Dere01g0232 554 Gene3D - 139 166 IPR027417 -
Dere01g0232 554 Gene3D - 7 138 IPR027417 -
Dere01g0232 554 FunFam Elongation factor G 258 334 - -
Dere01g0232 554 SUPERFAMILY EF-G C-terminal domain-like 254 331 IPR035647 -
Dere01g0232 554 SUPERFAMILY EF-G C-terminal domain-like 429 467 IPR035647 -
Dere01g0232 554 SUPERFAMILY Translation proteins 139 254 IPR009000 -
Dere01g0232 554 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 IPR031157 -
Dere01g0232 554 PRINTS GTP-binding elongation factor signature 83 93 IPR000795 GO:0003924|GO:0005525
Dere01g0232 554 PRINTS GTP-binding elongation factor signature 17 30 IPR000795 GO:0003924|GO:0005525
Dere01g0232 554 PRINTS GTP-binding elongation factor signature 63 71 IPR000795 GO:0003924|GO:0005525
Dere01g0232 554 PRINTS GTP-binding elongation factor signature 99 110 IPR000795 GO:0003924|GO:0005525
Dere01g0232 554 NCBIfam small GTP-binding protein domain 16 141 IPR005225 GO:0005525
Dere01g0232 554 Gene3D Elongation Factor G (Translational Gtpase), domain 3 258 334 - -
Dere01g0232 554 Gene3D - 370 450 IPR014721 -
Dere01g0232 554 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 13 244 IPR000795 GO:0003924|GO:0005525
Dere01g0232 554 SUPERFAMILY Ribosomal protein S5 domain 2-like 329 428 IPR020568 -
Dere01g0232 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 155 IPR027417 -
Dere01g0232 554 Pfam Elongation factor Tu GTP binding domain 15 141 IPR000795 GO:0003924|GO:0005525
Dere01g0232 554 SMART EFG_C_a 429 508 IPR000640 -
Dere01g0232 554 CDD EFG_III 255 330 IPR009022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0232 Dere-ChrDere01 6474615 6478704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0232 222 337 Eukaryotic Initiation Factors Gene Family AT3G22980 36.975 1.03e-10 62.8