Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0231 ATGATAGCTCATCTTCCTGTTTGTTCAATCCCATCCCCTAAAATAGTTTTAGTTGTTGGTGGTGGAGATAGTGGGGTTCTAAGGGAAGTATCCCACTATAGTTCTGTGGAGCATATAGATATTTTACACTTGAATGTTGGTGATGCTGTTGAATTTCTTCGATGTGCCCTTGAAGGAAAGTATGATGCCATCATTATTGATTCATCTAATCCTGTGGGTCCTGCTCAGGAACTTGTAAAGAAGCCATTTCTTGAGACTATAGCTAAAGCATTAAGGCTTGATGGAGTGCTTTGCAATATGACAGAAAGTATGTGGCTTCATACACACCTTATTCAAGAGATGATGTCCATGTGTCGAGAGATATTCAAAAGTTCAGCACATTATGCATGGGCAAGTGTTCCAACATATCCGAGTGGTGTGATCAATTTTCTTTTATGCTCCTCGGAGGGGCCACCTGTTGATTTTATAAATCCCATCAACCCCATCAAGATGGTTGAAGGTAATTTCAAGCACAAAAGAGAACTTAAATTCTATAATTCACAGATGCACTCAGCTGCTTTTGCCTCGCCCACATTTGTTAAGAGGGAGGTGAGCTTGCTCCGTGACACACAATCTATGAGACTCGTGCTTCTTCTGGTCCTAGCTGAAAAGTCTCCTACACTCCTTAATTTTCACTTGGACCTTGTTAGCCTAGAAGTTGCTAGCAAGATACAGTTGAAAGCATTAGCAGAAGAGATGGCAGCAATTAACAAAGGATTACGAAATGTTAAACAGGAGCTTGCAGCATCTGAAAATGACAGCCCTGTGGCTGAGACTTTTCGTAAGACACTGAAAGAATTTGTTGATGGTGCTGAGTTGAGGGTGCCATAA 870 0.4126 MIAHLPVCSIPSPKIVLVVGGGDSGVLREVSHYSSVEHIDILHLNVGDAVEFLRCALEGKYDAIIIDSSNPVGPAQELVKKPFLETIAKALRLDGVLCNMTESMWLHTHLIQEMMSMCREIFKSSAHYAWASVPTYPSGVINFLLCSSEGPPVDFINPINPIKMVEGNFKHKRELKFYNSQMHSAAFASPTFVKREVSLLRDTQSMRLVLLLVLAEKSPTLLNFHLDLVSLEVASKIQLKALAEEMAAINKGLRNVKQELAASENDSPVAETFRKTLKEFVDGAELRVP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0231 289 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 1 148 IPR030374 -
Dere01g0231 289 Coils Coil 239 266 - -
Dere01g0231 289 Gene3D Formin, FH2 domain 199 288 IPR042201 -
Dere01g0231 289 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 196 IPR029063 -
Dere01g0231 289 Gene3D Vaccinia Virus protein VP39 44 198 IPR029063 -
Dere01g0231 289 Gene3D Vaccinia Virus protein VP39 1 43 IPR029063 -
Dere01g0231 289 Pfam Formin Homology 2 Domain 213 285 IPR015425 -
Dere01g0231 289 CDD AdoMet_MTases 16 97 - -
Dere01g0231 289 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 42 IPR001045 GO:0003824
Dere01g0231 289 SUPERFAMILY Formin homology 2 domain (FH2 domain) 209 285 - -
Dere01g0231 289 Pfam Spermine/spermidine synthase domain 43 153 - -
Dere01g0231 289 Pfam Spermine/spermidine synthase domain 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0231 Dere-ChrDere01 6419063 6420277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0231 202 288 FH2 protein (formin) Gene Family AT5G07780 59.551 6.43e-23 96.3