Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0220 ATGTATTGCAATTTCAAGGAACAAGCAGCAGAGTATGTGAAGCAGGCAGTTCATGAGGATGATTCTGGAAACTATAAGAAGGCATTTACCCTTTATATGAATGCATTGGAATACCTGAAGACTCATTTGAAGTATGAGAAGAACCCCAAGATCAAGGAAGCAATAACCGAGAAATTTGCTCAATACTTGAGGAGAGCGGAGGAGATACGTGCCATTCTCGATGCAGGAGAAAGTGGGCGTAACTTGTCTAGTGGTGCAGCTCAATCTGATGCTGCAAGACCAAATTCAAAGTCAAGAGAAGAGAGAGATAAGGATGATCCAGAGAAAGCGAAGCTCAAGGCTGGTCTTGATTCCGTAATAATCAGAGAGAAACCAAATGTCAAATGGAGTGATGTTGCTGGGCTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTCATATTGCCTGTTAAGTTCCCACAATTTTTTACGGGGAAGAGACAACCATGGAGAGCATTTCTATTATATGGTCCTCCTGGAACAGGGAAGTCGTATTTAGCAAAGGCAGTAGCTACAGAGGCAGACTCGACATTCTTCAGTGTTTCATCATCAGATCTAGTTTCTAAATGGATGGGCGAAAGTGAAAAGCTGGTTTCCAGTCTTTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGACGAAATAGATTCTTTATGTGGCCAACGAGGTGAAGGTAATGAAAGTGAAGCATCTAGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGTGCGGGTAAAGAAGATCATAAAGTTCTCATTCTTGCAGCCACCAATACTCCTTATGCTCTGGATCAGGCCATACGACGACGCTTTGACAAACGAATATACATACCTCTCCCAGACATGAAGGCAAGGCAGCACATGTTTAAGGTGCATCTTGGAGATACCCCACATAACTTAACTGAAAAAGATTTTGAGGAATTGGCTAGCAAAACTGATGGATTTTCTGGTTCAGACATTTCTGTTTGTGTTAAGGATGTGCTTTTTGAACCTGTTCGTAAAACCAGGGATTCGAAATTCTTTAGGAAAACCTCCAACGGAATGTGGATCCCTTGCGAGTCTAACAAAAAAGGAGCTGTCAACATTACCCTGCAAGAACTTGATGCACAAGGTCTTGCTTCAAAGATTGTGCCACCACCGATAACAAGGGCAGATTTTGATAAGGTACTAGCGAGGCAGAAGCCAACAGTAAGTAAAGCTGATCTTGAGCTGCATGAGAGATTCACCCAGGAGTTTGGGGAGGAGGGTTGA 1302 0.427 MYCNFKEQAAEYVKQAVHEDDSGNYKKAFTLYMNALEYLKTHLKYEKNPKIKEAITEKFAQYLRRAEEIRAILDAGESGRNLSSGAAQSDAARPNSKSREERDKDDPEKAKLKAGLDSVIIREKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGAGKEDHKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLTEKDFEELASKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKTSNGMWIPCESNKKGAVNITLQELDAQGLASKIVPPPITRADFDKVLARQKPTVSKADLELHERFTQEFGEEG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0220 433 SMART AAA_5 162 298 IPR003593 GO:0016887
Dere01g0220 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Dere01g0220 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Dere01g0220 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Dere01g0220 433 MobiDBLite consensus disorder prediction 94 111 - -
Dere01g0220 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Dere01g0220 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 428 IPR027417 -
Dere01g0220 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Dere01g0220 433 SUPERFAMILY MIT domain 4 83 IPR036181 -
Dere01g0220 433 Gene3D - 298 413 - -
Dere01g0220 433 Gene3D - 6 75 - -
Dere01g0220 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Dere01g0220 433 Gene3D - 125 420 IPR027417 -
Dere01g0220 433 PANTHER AAA DOMAIN-CONTAINING 23 431 - -
Dere01g0220 433 CDD RecA-like_VPS4 124 294 - -
Dere01g0220 433 MobiDBLite consensus disorder prediction 80 111 - -
Dere01g0220 433 SMART smart 2 79 IPR007330 -
Dere01g0220 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0220 Dere-ChrDere01 6048896 6052646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0220 161 354 Calmodulin-binding Proteins AT3G56690 36.224 4.18e-35 136