Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0219 ATGGATGTTCTATCTATTTCACCCGCATTCAACAAATCTATGGCCTTTTCCATTCTCAAACCTCAAAGAACCCAAATTCACCCACTATCCTTAAACCCCAGATTACCCAACTTATCCAAGAAAACAACCCATTTCAATCTTTATTCTTCTTCTTCTTCTTTCAGTTTTTGTTCAAGAATAGCTGCAACTTCAGCAACTACATACACTCCCTTCGCTTCTTCCACCACTGAGAACCGCCACTGGATAGTAATCATGGAGAAGCCTCCACAAGGGGTTAATTCTAAGCCACAAGTCATTGATTATTATGTTCAAACTCTGCAAAGAGTTATCGGCAGTGAGAAGGAGGCTCAAATGTGTATTTATGATGCTTCCTGGGATACCCACTTCGGTTTTTGTTGTGACATCGATGAAGAAACTTCCTCCCAGCTCGCTCGTTTACCGGGGGTCATATCGGTTGAGCCCCATCCAGATTTCAACTCTCCAGAAAAGGTTTATAGGTCATCAAATGGGCAGGCAGATAATTTGTCAAAACTACAAATTGGAGCCAACTTGTTGTTCCCTGCCGAGAATTCGGAGCATTGGCTTGTTAGAATGGATAAACCTGGTGTTGGGGTTGTTACCAAGGCCCAGGTGGTGGATTATTATGCTCAAATACTGACCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTTTCCTGGAAAACCAACTTTGGCTTTTGTTGTGAACTTGATGAGGAGTGTGCACAAGAGCTAGCTGGCGTGCCTGGCGTCTTATCAGTTCAGCCAGATAATAATTTTGAGTCAGAAATTAAAGACTATGCAGGTAGTAACTTAGAAAACAGTCTGAATGTGCTGAACTCTTCTGAAGCAAGTCAAGCAACTCCCATAAAAACAAGAAAACTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAGGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACCACAGAGGAGGCTGCAGCTGCAGCACTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTTGATGTTGCCAAGACTAGCCCACCCAAATACAACAGGGGCCGTGCCAGACCTGTGGTCTGA 1191 0.4232 MDVLSISPAFNKSMAFSILKPQRTQIHPLSLNPRLPNLSKKTTHFNLYSSSSSFSFCSRIAATSATTYTPFASSTTENRHWIVIMEKPPQGVNSKPQVIDYYVQTLQRVIGSEKEAQMCIYDASWDTHFGFCCDIDEETSSQLARLPGVISVEPHPDFNSPEKVYRSSNGQADNLSKLQIGANLLFPAENSEHWLVRMDKPGVGVVTKAQVVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEECAQELAGVPGVLSVQPDNNFESEIKDYAGSNLENSLNVLNSSEASQATPIKTRKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKTSPPKYNRGRARPVV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0219 396 FunFam Organelle RRM domain-containing protein 1, chloroplastic 182 271 - -
Dere01g0219 396 SUPERFAMILY RNA-binding domain, RBD 294 392 IPR035979 GO:0003676
Dere01g0219 396 SMART rrm1_1 305 378 IPR000504 GO:0003723
Dere01g0219 396 Gene3D - 280 395 IPR012677 -
Dere01g0219 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Dere01g0219 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 372 IPR000504 GO:0003723
Dere01g0219 396 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 62 158 IPR037045 -
Dere01g0219 396 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 186 272 IPR037045 -
Dere01g0219 396 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 184 373 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0219 Dere-ChrDere01 6042672 6046505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0219 301 395 C2H2 Transcription Factor Family AT2G19380 37.113 3.87e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0219 01 6042672 6046505 Dere01g0219 01 6042672 6046505 ECH