Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0203 ATGACAAGAGAGAAGGTCAAACAAGAGTACATCAGTGATGATGCTAAAAGAAGAATATCATTCAGGAAAAGGAAAGGAAGCATCATGAAGAAGATAAGTGAGCTCAGCATCCTTTGTGGTGTGGAGGCTGGTGCCATTGTTTACAGTGGCCCCTCAGATCCTCAACCAGAGGTTTGGCCAGATGCAAGAGGAGTCCAGCAGGTGATTGAGAGGTACCAGGCTAAGCCTGTCTTGCAGAAGACCCTGAACCAAGAGGGCTTAATACATCAGAGGATCAATAAAGGGAAAGAACTTTTGAAGAAGCGACGTAAAGAAAACCATGAGGAAGAGATTTCCCAACTAATGCTCAATTGTATGGGAGGGCTTGCAAAGCCCAATACTGTGGAACAGACGATGGATATGAAGATGATGGTTGAGCAGCGTTTGAAGGACATTAACGGGATGATGGTGGCATCTCACAAAGAAGTGGAAGTCTTTGTGTCATCACCAATGTCCAAAGGATTAATCCACGGAGGGAATGAAAAGTTGATGGACAAAATTCTGCAGTTTGGCAAGGACTCTGACCAAGAAGTTGAAGTCTATGTTCCAGTTATGCCAACATCAGTCCATGTTCCATCCCCACCAACATCAGTCTATGCTCCTGCCTCACGAACATCAGAGTATGTTCCCATTCCACCAACCTCTGATGAATTGACAGACCAAAACCTGCAGTATGGCATGGACTCTGACAACATGATTAATTCATCATGGTGGAAGGACATAGAAAATATGGAAGATTATATGGGTGCTGGTGCATACAACAAGCCTCTGCCTTTTAGCAATGCCAACTACCGAAATGCTTCTTCATCTTACAACCCATTTTCTTCTTGA 870 0.4402 MTREKVKQEYISDDAKRRISFRKRKGSIMKKISELSILCGVEAGAIVYSGPSDPQPEVWPDARGVQQVIERYQAKPVLQKTLNQEGLIHQRINKGKELLKKRRKENHEEEISQLMLNCMGGLAKPNTVEQTMDMKMMVEQRLKDINGMMVASHKEVEVFVSSPMSKGLIHGGNEKLMDKILQFGKDSDQEVEVYVPVMPTSVHVPSPPTSVYAPASRTSEYVPIPPTSDELTDQNLQYGMDSDNMINSSWWKDIENMEDYMGAGAYNKPLPFSNANYRNASSSYNPFSS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0203 289 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere01g0203 289 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere01g0203 289 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere01g0203 289 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Dere01g0203 289 PANTHER MADS BOX PROTEIN 3 142 - -
Dere01g0203 289 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Dere01g0203 289 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere01g0203 289 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Dere01g0203 289 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0203 Dere-ChrDere01 5838126 5838995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0203 1 219 Type I MADS-box Gene Family AT5G48670 37.281 3.43e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere01g0203 SRF-TF 1.4e-14 No_clan