Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0197 ATGGCCGCTCTAACCTACCTGGGAGAGGGACGGCTGAAAGCGTCAACAAGAAAGAAAGCGGTAGGGTTTCTGGTTTTTGGATCATTCACAGGGTGGGTTGTTCAATCAAGGAGATCGGGCCTAATTCTTTTCACTTTGGTTGCTTCCTGCTTTCAGGCCATGGACATATCAAATCCTGCAGCATTTGTAAATGCAGAGTTGCTTCCCAATTACATAGGGAAGAAAGTACGGGCAGTGGTTCAAGTTCTTCGATCTGATGGTGGGGTTGCCACTGGAAAATCCACAGATGACAGACAGCTATCTGTGAAAGGGTTGCCGCAAGTTCCTCCTGTGAATTACGTTGAGGTGATTGGTATTGCAGAGAGTAACCAATTGATTAATGCTGAGATATGGACTGACTTTGGCACCACATTTGACACCCACTCTTACGATAAGTTATGCCAACTAGCAAATGGGGAATTCAAAAGTCTTTTTCTGTAG 480 0.4521 MAALTYLGEGRLKASTRKKAVGFLVFGSFTGWVVQSRRSGLILFTLVASCFQAMDISNPAAFVNAELLPNYIGKKVRAVVQVLRSDGGVATGKSTDDRQLSVKGLPQVPPVNYVEVIGIAESNQLINAEIWTDFGTTFDTHSYDKLCQLANGEFKSLFL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0197 159 CDD RPA3 59 158 - -
Dere01g0197 159 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 49 159 - -
Dere01g0197 159 Pfam Replication factor A protein 3 57 153 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere01g0197 159 SUPERFAMILY Nucleic acid-binding proteins 58 158 IPR012340 -
Dere01g0197 159 Gene3D - 56 159 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0197 Dere-ChrDere01 5766942 5769242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0197 54 159 Core DNA Replication Machinery Family AT4G18590 62.264 4.14e-46 144