Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0195 ATGGGCTCAGAAGCAATCCTACTTCCAAAATGGGCATCTCAGCCTTGCATCATGGGAATCGACGAAGCTGGCCGGGGACCCGTTCTAGGACCCATGGTGTACGGTTGCTTGTACTGTGCTCGCTCGTATCAGAAGACCCTTGCAACTCTGAGTTTTGCTGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGATAATTTAAAGGGAAATGAATCAATTGGATGGGCCGTTGATGTCTTGGACCCAAGGGAACTCTCGGCTAAAATGTTGAAGAGGAATAAGATAAACTTGAATGAGATATCGCATCAGTCTGCCATGGGCCTGATTGATAGAGTACTGAAGATGGGAGTTCTTCTAACTGAGGTTTATATAGATACAGTTGGAGATCCGGGAAAGTATGCAATGATGCTATCTAAGAATTTTCCATCTATCAAGTTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTGAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCGAGCTTTGCGGGAATGGGTGCTTGATGAGACTGCTGAAAACATGCATAGGAACTTTGGCTCTGGATATCCTGGAGATCCCCAAACCAAATCCTGGTTAGAACAGCATAAACATTCTGTCTTTGGATTCCCAACATTGGTCAGATTCAGTTGGGGAACCTGCACTACATATTTTAAAGATATCGTGCAAGTCTTATGGGAATCTGATAAAATGGATGAAGATGGTGGAACTGGTAATAACAGTCACAAGAGGCAATTGAAATTAAGTAACGTAGGTTTCACCACATCCAAGAGAAGAAGTGAAGAAATAGAATCAAGTGGCAAAGGTCGCAGCAGGTTTTTCCAGGCTCGGAAACTTGAACATCTAACTGATTTCTAA 900 0.4278 MGSEAILLPKWASQPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLATLSFADSKTLKEEKREELFDNLKGNESIGWAVDVLDPRELSAKMLKRNKINLNEISHQSAMGLIDRVLKMGVLLTEVYIDTVGDPGKYAMMLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMHRNFGSGYPGDPQTKSWLEQHKHSVFGFPTLVRFSWGTCTTYFKDIVQVLWESDKMDEDGGTGNNSHKRQLKLSNVGFTTSKRRSEEIESSGKGRSRFFQARKLEHLTDF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0195 299 FunFam Ribonuclease 189 235 - -
Dere01g0195 299 NCBIfam ribonuclease HII 17 230 IPR004649 GO:0004523|GO:0016070
Dere01g0195 299 Gene3D Ribonuclease hii. Domain 2 188 234 IPR023160 GO:0004523
Dere01g0195 299 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 15 237 IPR024567 GO:0004523
Dere01g0195 299 MobiDBLite consensus disorder prediction 246 283 - -
Dere01g0195 299 FunFam Ribonuclease 3 187 - -
Dere01g0195 299 Gene3D - 4 187 IPR036397 GO:0003676
Dere01g0195 299 CDD RNase_HII_eukaryota_like 18 234 - -
Dere01g0195 299 SUPERFAMILY Ribonuclease H-like 16 233 IPR012337 -
Dere01g0195 299 MobiDBLite consensus disorder prediction 255 270 - -
Dere01g0195 299 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 286 IPR001352 GO:0003723|GO:0004523
Dere01g0195 299 Pfam Ribonuclease HII 18 228 IPR024567 GO:0004523
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0195 1 299 Core DNA Replication Machinery Family AT2G25100 67.893 3.30e-149 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g0195 01 5754439 5759695 Dere01g0195 01 5754439 5759695 ECH