Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0175 ATGTTTCACGACTCCACCGCCGCCGCCGACGAGCCGTGGCAGTTCCAGTTCCGGTCGACGGCGCAGTGGACGCGCGAGCAGGACAAGCTGTTCGAGCGGGCTCTGTTGATGGTCCCGGAGGACTGGGCGGACCGGTGGGAGAGGATCGCCGAGAAGGTCCCCGGTGCGTCGCCGGAGCAGGTCCAGGAGCGATACGAGGAGTTGGTTCGCGACGTGACGGATATTGATGCGGGTCGGGTTCAGATTCCGGCGTACCCGGAGATTCCGTCGGGCAGTGGGTCCTCCAGTTGGGACTCGGCGAACCAAATTTCGTTTAGCTCGAAACCTAGGCAGAATGATACCGAGAGGAAGAAGGGTACGCCTTGGACTGAGGAAGAACATAGGCTATTCCTAGTTGGACTGCAGCAATATGGCAAGGGTGATTGGAGAAGCATTTCAAGAAACGTTGTGGTGACAAGAACACCAACTCAGGTGGCGAGCCATGCCCAGAAGTACTATCTTCGCCAAATGGCAGGAGGAAAGAAAGAGAGGAAAAGATCAAGCATCCATGATATCACCACTGTGGACAGCAACGTTGTACCCATGGATCAAAACCGGGTTGTTCCTTCGAGTCATCCGGTGCAGCAGTTGCAGCAGCTGCAGCAGATGCAACAGATGCATCAATTTAACCCACAAGATCACTTTATTGATGAATCTGATAGGTTTGGGTTTCCAAACTACAGCTTTCAAATGTAG 735 0.5429 MFHDSTAAADEPWQFQFRSTAQWTREQDKLFERALLMVPEDWADRWERIAEKVPGASPEQVQERYEELVRDVTDIDAGRVQIPAYPEIPSGSGSSSWDSANQISFSSKPRQNDTERKKGTPWTEEEHRLFLVGLQQYGKGDWRSISRNVVVTRTPTQVASHAQKYYLRQMAGGKKERKRSSIHDITTVDSNVVPMDQNRVVPSSHPVQQLQQLQQMQQMHQFNPQDHFIDESDRFGFPNYSFQM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0175 244 ProSiteProfiles SANT domain profile. 117 170 IPR017884 -
Dere01g0175 244 MobiDBLite consensus disorder prediction 84 121 - -
Dere01g0175 244 SUPERFAMILY Homeodomain-like 115 169 IPR009057 -
Dere01g0175 244 SMART sant 19 71 IPR001005 -
Dere01g0175 244 SMART sant 118 168 IPR001005 -
Dere01g0175 244 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 169 IPR006447 GO:0003677
Dere01g0175 244 FunFam Transcription factor SRM1 15 82 - -
Dere01g0175 244 CDD SANT 121 165 IPR001005 -
Dere01g0175 244 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 224 IPR043363 -
Dere01g0175 244 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Dere01g0175 244 MobiDBLite consensus disorder prediction 88 109 - -
Dere01g0175 244 Gene3D - 120 170 - -
Dere01g0175 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 170 IPR017930 -
Dere01g0175 244 SUPERFAMILY Homeodomain-like 22 76 IPR009057 -
Dere01g0175 244 CDD SANT 23 69 IPR001005 -
Dere01g0175 244 Gene3D - 16 82 - -
Dere01g0175 244 Pfam Myb-like DNA-binding domain 121 165 IPR001005 -
Dere01g0175 244 Pfam Myb-like DNA-binding domain 22 66 IPR001005 -
Dere01g0175 244 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Dere01g0175 244 FunFam transcription factor MYB1R1 120 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0175 Dere-ChrDere01 5531666 5533315 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g0175 Myb_DNA-binding 1.9e-12 CL0123