Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0161 ATGTACAACATCACATCCGATTCCGACGACTCTTCGCCGGACATGTCCGGATATGCTTACTACTCTTTCGGATTATCCATCGGAGTTCTCCTCCTCTTCGCATTCCTCACCGTCACCTTGTACTACTGCTCCCGCAGAAACTCCGTCAACGAGACCCAACCACCACGAGGTAGCAACAGAAGCTTTAACTTGCATAACATTACTGTGGAAGATTCTTCCATAACTAGCAGCCCTCAGGTAGGTATTGACATCGCGACCTTAAAAAGTTATCCAGTATTATTGTATTCTGAAGTGAAACATGATCACAAAGATGCTTCTACTTCTGGTGATTCTGCAACAAACTGTTCAATATGCTTAGGGGATTACAAGGACGGTGAGTGGCTGCGGGTGTTACCGGATTGTGATCACTTTTTTCACCGGAAGTGTATCGATATGTGGCTGAGGAGGAACCCTTCTTGTCCCCTGTGTCGAACCTCGCCGCTTCCGACGCCGGTTTCAACTCCGCTTGCTGAAGTCGCTCCTTCGGCAAGAACAAGGGTTGGAGTTTAA 549 0.4772 MYNITSDSDDSSPDMSGYAYYSFGLSIGVLLLFAFLTVTLYYCSRRNSVNETQPPRGSNRSFNLHNITVEDSSITSSPQVGIDIATLKSYPVLLYSEVKHDHKDASTSGDSATNCSICLGDYKDGEWLRVLPDCDHFFHRKCIDMWLRRNPSCPLCRTSPLPTPVSTPLAEVAPSARTRVGV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0161 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 161 IPR013083 -
Dere01g0161 182 SMART ring_2 115 156 IPR001841 -
Dere01g0161 182 FunFam E3 ubiquitin-protein ligase ATL6 70 162 - -
Dere01g0161 182 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Dere01g0161 182 Pfam Ring finger domain 114 157 IPR001841 -
Dere01g0161 182 CDD RING-H2_EL5-like 115 157 - -
Dere01g0161 182 SUPERFAMILY RING/U-box 86 162 - -
Dere01g0161 182 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 171 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0161 Dere-ChrDere01 5251600 5252148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0161 14 176 C3H Transcription Factor Family AT2G35910 49.080 1.25e-39 132