Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0159 ATGAACTTAAACAGCAGCACCTTCGCCTTCGTGTTCGGCTTCGTCTTTGTCATCTTAGCCATAAGTATTGCTTGTCTTCGCCTTCGCAAGCTTTCCAGTACCCCCACCATGTTCAATATTCTCGCCGGCGTTCATCCTCCTGATTCCGCCGCCGCACCGGGAGGCTCCGTGGAGCTCAGAGTCTCAGAGCACGGCCTCGATGAAACCGCTCTCAATAGCTTCCCCAAGCTGTTGTACTGTGAGGTGAAGAAAAGCACTGGTTCGAATAATCATCCTTCCAATTCTTCGTGTTCGATCTGCTTGGCGGATTATAAGGAGACTGACACGTTGAGATTGCTTCCTGATTGTGGCCATCTTTATCATCTTCATTGCGTTGATCCATGGCTCAAGTTACACGCCACTTGTCCCATATGTCGAACCTCGTCTTCAGTCAAAGCTCATAGCTCCATGGGGGGTACACAGTGA 465 0.5011 MNLNSSTFAFVFGFVFVILAISIACLRLRKLSSTPTMFNILAGVHPPDSAAAPGGSVELRVSEHGLDETALNSFPKLLYCEVKKSTGSNNHPSNSSCSICLADYKETDTLRLLPDCGHLYHLHCVDPWLKLHATCPICRTSSSVKAHSSMGGTQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0159 154 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 145 IPR045899 -
Dere01g0159 154 FunFam E3 ubiquitin-protein ligase ATL6 56 145 - -
Dere01g0159 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 144 IPR013083 -
Dere01g0159 154 Pfam Ring finger domain 96 139 IPR001841 -
Dere01g0159 154 CDD RING-H2_PA-TM-RING 96 139 - -
Dere01g0159 154 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Dere01g0159 154 SUPERFAMILY RING/U-box 96 145 - -
Dere01g0159 154 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0159 Dere-ChrDere01 5241576 5242040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0159 65 141 C3H Transcription Factor Family AT5G06490 57.692 2.05e-27 99.8