Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0133 ATGATGAAGAGGGAAAGATCAGATCAGCATCAGGTTGATCATCACAGAATAGCCATGGCCAACTGCTTGATGCTGCTTTCTGAGGCAGCTTCCTACGACTCTAACAGCGGATCTTCTCCTTCTTCTTCCGGCGGCCGTGTGTTCGAGTGTAAGACCTGCAACCGCCACTTCTCGTCGTTCCAGGCGCTCGGCGGCCACCGGGCGAGCCACAAGAAGCCGAGGATGATGATGGGGGGAGGAGAACATAATAACAATAGCAATAGTAACAGTGATGATGGTCTTCATGGTTCATCACCTGCAAAGCCTAAGACTCATGAGTGCTCAGTCTGTGGATTGGAGTTTGCAATAGGGCAGGCTTTGGGGGGTCACATGAGGAGGCACAGAGCACCAATATCAGTATCTTCCAATAACAATGATGGTAATTGTGTGGCTATGAGTAGCAGTAGTGGAAGTGGAAGCTCTGGGGCTGAGTGTGATTCTTCAGGTACAGAGAAGAAGATGAAGAAGGGCAAGAGGGTTTTGTTTTTGGATTTGAACTTGACACCCTTTGAGAATGACTTGGAGTTTCTGGGGATTGGGATTGGAAAGCCAAGTAGCACTTCTTTGGTGGATTGCTTCTATTGA 624 0.4856 MMKRERSDQHQVDHHRIAMANCLMLLSEAASYDSNSGSSPSSSGGRVFECKTCNRHFSSFQALGGHRASHKKPRMMMGGGEHNNNSNSNSDDGLHGSSPAKPKTHECSVCGLEFAIGQALGGHMRRHRAPISVSSNNNDGNCVAMSSSSGSGSSGAECDSSGTEKKMKKGKRVLFLDLNLTPFENDLEFLGIGIGKPSSTSLVDCFY 207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0133 207 SMART c2h2final6 105 127 IPR013087 -
Dere01g0133 207 SMART c2h2final6 48 70 IPR013087 -
Dere01g0133 207 MobiDBLite consensus disorder prediction 63 100 - -
Dere01g0133 207 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Dere01g0133 207 MobiDBLite consensus disorder prediction 142 163 - -
Dere01g0133 207 MobiDBLite consensus disorder prediction 80 95 - -
Dere01g0133 207 Pfam C2H2-type zinc finger 105 130 - -
Dere01g0133 207 Pfam C2H2-type zinc finger 47 73 - -
Dere01g0133 207 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Dere01g0133 207 Gene3D Classic Zinc Finger 25 128 - -
Dere01g0133 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Dere01g0133 207 MobiDBLite consensus disorder prediction 142 160 - -
Dere01g0133 207 SUPERFAMILY beta-beta-alpha zinc fingers 46 127 IPR036236 -
Dere01g0133 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
Dere01g0133 207 PANTHER ZINC FINGER PROTEIN ZAT5 2 185 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere01g0133 Dere-ChrDere01 4771323 4771946 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0133 2 190 C2H2 Transcription Factor Family AT2G37430 40.526 7.35e-37 125
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g0133 zf-C2H2_6 4.6e-10 CL0361