LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g0115	ATGGGGATCCTTCTCAAGTGCTTTGGTGGCTCTGGTTCTACTAAACAACCACCCACAACAATAGAACATCTGTGCCATCGCTTTTCACTTGCCCAACTTCGAAAATCTACCAACAACTTCCACACAAGTCAACTAATCGGAAGCGGAGCCTTTGGTGACGCTTACAGGGGCTGCATCTCCATCAATGGCGAACCAATACAAATTGCAGTGAAGAGGGTACGAGCAGGAAGCTATACACCGCCAGTGCTCTCTCTGTTCAAGAATGAAATCCTATTCATGTGCCAGCTACACCATCCTAATTTGGTGTCTCTTGTTGGATTTTGCAACGATGAAAAAGCAAAAGAATTTATGGTGGTTTATGAGTACATGCCAAATGGATCTCTGGCTGATCAATTAGACGGACGGGATAATAGGTCACCAATACTGTCATGGAAAAAAAGGCTAGAAGTCAGCATAGGAGCAGCGCGTGCATTACACTACCTTCATGCCGGAACCAAGCGCACCATCTTCCACCGTGATGTGAAACCGTATAACATTCTTTTGGATGAGAATTGTACTCCCAAACTCACAGGTTTTGGGTTTGCTTTAAAGGGCCCAAAATTTTCATCCAAGGCCCCAAAACCCATCGAGTTGGATCACATTGCAGCATTGATATGCGGAAAGTCGATACATGAAATTTATTGTATGATTTCGGAGGAGGAGGGAGAGGATGAACACACTTGGTTATCTTTCGATAACAAAATTAAAGAACTACAAAATGCGAAGGCTATGAGAATTATTGATCCAAGTTTGGTAGGACAAATACTGCCAGAGTGTTGGAAATTGTATATGGACATTACACAGAGTTGCTTGAGTGAAGATGAGAATCCGAGGCCAGCGATGGGCGAAGTGGAGGTGGAACTTGAGCGTGTCTTGGAAATTCAGGAGGAAGCTGATGCCAACATCCCATTTCATGCTTTCTTATGGTCTTAA	972	0.4383	MGILLKCFGGSGSTKQPPTTIEHLCHRFSLAQLRKSTNNFHTSQLIGSGAFGDAYRGCISINGEPIQIAVKRVRAGSYTPPVLSLFKNEILFMCQLHHPNLVSLVGFCNDEKAKEFMVVYEYMPNGSLADQLDGRDNRSPILSWKKRLEVSIGAARALHYLHAGTKRTIFHRDVKPYNILLDENCTPKLTGFGFALKGPKFSSKAPKPIELDHIAALICGKSIHEIYCMISEEEGEDEHTWLSFDNKIKELQNAKAMRIIDPSLVGQILPECWKLYMDITQSCLSEDENPRPAMGEVEVELERVLEIQEEADANIPFHAFLWS	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g0115	323	Gene3D	Transferase(Phosphotransferase) domain 1	214	317	-	-
	Dere01g0115	323	ProSitePatterns	Protein kinases ATP-binding region signature.	46	71	IPR017441	GO:0005524
	Dere01g0115	323	PANTHER	OS07G0166700 PROTEIN	247	308	IPR045272	GO:0004714\|GO:0006468
	Dere01g0115	323	SMART	serkin_6	40	305	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g0115	323	Gene3D	Transferase(Phosphotransferase) domain 1	123	208	-	-
	Dere01g0115	323	Pfam	Protein tyrosine and serine/threonine kinase	42	197	IPR001245	GO:0004672\|GO:0006468
	Dere01g0115	323	SUPERFAMILY	Protein kinase-like (PK-like)	15	300	IPR011009	-
	Dere01g0115	323	PIRSF	ILK	267	317	-	-
	Dere01g0115	323	PIRSF	ILK	5	211	-	-
	Dere01g0115	323	Gene3D	Phosphorylase Kinase; domain 1	11	122	-	-
	Dere01g0115	323	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Dere01g0115	323	ProSiteProfiles	Protein kinase domain profile.	40	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g0115	Dere-ChrDere01	4586741	4587802	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g0115	26	308	Receptor kinase-like Gene Family	AT2G39360	34.983	6.70e-50	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Dere01g0115		PK_Tyr_Ser-Thr	1.1e-26	CL0016