Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0112 ATGTTGCTGAACAACACAGGCTTCAGAGTCTCCAAAAGGCCAAGGTCATACAATGGCTTTGCTTTACACCGCCATCCACAATTACTAATGTTAGGGATGTTGGTGAATGGCTTCTACTTTGAGCATTGGTACACACTACACAAAAAGCTGATGTACCAACTTTTGCAAGTGATTTGGGATATTAGGGAGGCAGTGGGTGAAAGTGAGGTTGAGGATGTGAATGAGGGTGGACATGCTTGCTTCTCCTCTTGGAATGCAAACCGCGCCTTTGTTGTGGTACGTAAGAGTACCTTTGTTGTGGCGGGCTCAGGGATAAATGTCATGTCTATTCCTTCCTTTGTGGTAGAAGAAGGCTTGGGTGGTGTGTACAGAGGTCGCATCTCTATCAATGGCGAAGCAAAAGAATTTGCACAAAAGAGGCTACAAGCAGCAGGACCCCAAGGGCTCTATGAGTTCAAGAACATGTGCCAACTACACCACCCTAATCTAGTGTCTCTAATTGGATTTTGCAAGGATAAAAAAGAAATGATTGGGGTGTATGAGTACTTGCCCAATGGATCCCTCATAGATCAACTATATCGAAAGGATAGTAACTCACCAGCACTGTCATGGAAGAAACGGCTAGAAATCATCATAGGAGTAGCACGTGGATTGCACTACCTTCAAACAGGAACCAAGCGCACTATCATCCACCGAGATGTAAAATCGAGTAACATTCTTCTTGATGAGAATTGGATTCCCAAACTCTCAAATTTCGGGAAAGTTTTGAAGGGCCCAAAATTTTCGTCTGAGGCCCCAAAACCCATTGAGACGGCTATTACAGTTACCTTCGGATACATTGCCCCTGAGTACATGCTATATGGTGAGGTCATGGATAAATGTGATGTGTATTCTTTTGGAGTGGTATTGTTAGAATTGATATGCGGAAAGCCTAGAGCCCAAATCGGAACTCTGATTTTAGATAGTGAATTTGAGGAAAGAATTGGCCAAAAAGAAATATACGAGGAAGACAGTGAACATGGTTCACCATCGACTTGGGATAAGGAGGGAGAGGATGAGGGTGAGGTGAAGGATGAGGACGCGAGTGCATATGCTTCGCCATCGATACAGGATAAGAACAGAGAGAGCCATGAAGAGCAATTGATGAAATTAATCACCAGAGCAGATATGGCCACCACCAACATGGCAGCTCCAATGCAAGAATTGGATGGGAAAATATCTAAAATGCTTCAATTAATCAATGATGCTGAACTGCTTTATGAAGTCGAGTCTAAGATGAGAGATCGCATGAAAAGACTTGCTGAAGACATAGGAAGGGATTTTACATCCTAG 1332 0.4339 MLLNNTGFRVSKRPRSYNGFALHRHPQLLMLGMLVNGFYFEHWYTLHKKLMYQLLQVIWDIREAVGESEVEDVNEGGHACFSSWNANRAFVVVRKSTFVVAGSGINVMSIPSFVVEEGLGGVYRGRISINGEAKEFAQKRLQAAGPQGLYEFKNMCQLHHPNLVSLIGFCKDKKEMIGVYEYLPNGSLIDQLYRKDSNSPALSWKKRLEIIIGVARGLHYLQTGTKRTIIHRDVKSSNILLDENWIPKLSNFGKVLKGPKFSSEAPKPIETAITVTFGYIAPEYMLYGEVMDKCDVYSFGVVLLELICGKPRAQIGTLILDSEFEERIGQKEIYEEDSEHGSPSTWDKEGEDEGEVKDEDASAYASPSIQDKNRESHEEQLMKLITRADMATTNMAAPMQELDGKISKMLQLINDAELLYEVESKMRDRMKRLAEDIGRDFTS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0112 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Dere01g0112 443 FunFam Os07g0541700 protein 183 267 - -
Dere01g0112 443 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Dere01g0112 443 SMART serkin_6 113 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0112 443 MobiDBLite consensus disorder prediction 332 376 - -
Dere01g0112 443 MobiDBLite consensus disorder prediction 332 351 - -
Dere01g0112 443 Pfam Protein tyrosine and serine/threonine kinase 147 310 IPR001245 GO:0004672|GO:0006468
Dere01g0112 443 SUPERFAMILY Protein kinase-like (PK-like) 118 312 IPR011009 -
Dere01g0112 443 ProSiteProfiles Protein kinase domain profile. 108 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0112 443 Gene3D Phosphorylase Kinase; domain 1 114 183 - -
Dere01g0112 443 PANTHER OS07G0166700 PROTEIN 113 350 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0112 Dere-ChrDere01 4539480 4550679 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0112 118 311 Receptor kinase-like Gene Family AT5G38990 52.261 1.30e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Dere01g0112 PK_Tyr_Ser-Thr 3.5e-31 CL0016