Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0089 ATGGGTTGCATTAACTCCAAGAAGGCTATTGCCAGAGCTTCACCTGCGTATGTGCATTCCGGCTCATTAACTGATAATAGGTCTGCCATTGCGGAGCCTCCGTCCAGAGTACAATCTGGGGTTCTGATTATTGAGAACAAAGCGGAAGCACCATCGGAGGATCGGAGCCGGGATGGGAAAAAATTTAGGAAGAACACTTCCAAAGGAGCTGGCTCTTTCAGAATCTCGCATAGATTCGTGGAAGCAGAGCTGAATGCGGCCGGATGGCCCCCTTGGCTCACCTCTACTGCAGGGGAAGCTGTCCACGGATGGGTGCCCCTCAAGGCTGAATCATATGAGAAATTAGACAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGGGCACGAGAGGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACACATTGACAGTTCTCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATCCTACGCAGGCTTGACCACCCAAATATCATGAAACTGGAGGGTATAATTACATCCCGACTATCAAGTAGCTTATACCTTGTATTTGAATACATGGAGCATGATCTAGCCGGTCTGGTATCTTCTCCTGACATCAAGTTCAGTGAGACACAGGTTAAATGTTACATGAGGCAGCTGTTTAGTGGACTGGAGCACTGTCATATCCATGGTGTCATGCATCGCGACATTAAAACATCCAATATATTGGTTAATAATGAAGGTGTCCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAGCGCCAATAACAGACACCCGTTGACCAGTTGTGTAGTGACTCTATGGTATCGTCCTCCTGAACTCTTGATGGGATCGACCAATTATGGAGTATCAGTGGATCTGTGGAGTGTTGGCTGTGTTTTTGCAGAACTTTTTCTGGGGAAGCCTATTCTTAAGGGGAGAACTGAGGTTGAACAAATACACAAAATATTTAAGCTTTGTGGTTCTCCACCTGATGAGTTCTGGAAAAAGTATAAGCTTCCTCATGCGACAATGTTTAAACCTCAGACTCATTATGAATGCACTCTAAGGGAGCAGTGTAAAGACATTCCAGTAACTGCTGTAAACCTAATTGAGACTTTACTTTCGGTTGACCCTTTGAAGCGTGGGACTGCCTCCTCTGCCCTAATGTCTGAGTATTTCAGCACCAAACCGTATGCTTGTGATCCATCAATCCTGCCGAAGTATCCACCACACAAAGAAATGGATGCCAAAATTCGGGAAGATGCATGCAGGAAAAAGATTGGAGTTAAAGTGCAAGAGGCTGCAAAACCAAGAAAGCAAAGGCGAGTCCGTAAAATTTTGCACGAACCAACCAATCTCAATAAGTCAGCTTCAAAACAAGAGGAAGTGCAGAACGTCTCTCAAAATGCTCATAAAGACCATGGTAAAGCACATCTTCCCAAGGAAAAAGGAGGAGCTATGCACAGAGGGGCATTGAAGCCATCATCCAATGCATCAACAGATACTACCCGCTTAATGGATGTACCTCATGGCTTCAGTGTACCAGTGCCAGTCTCAGGATCCAATGGTTTTACATGGACCAAAAACAGAAAACTAGATGCTGCATCAACTTTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTCGATCCTTCCTTTGCAAAAGGCACATATGATTTAACCAGACGAGGGACAGAAGTTTCAGATAGAAAATATAATGACCATGCGGGCCATCATGATGAGACTTCCAACCATCAGCAACAAAAGCACCAGGTTCCACATGGTCAACGGGACTCTTTTGATGCAGCTGAGGAATACCATTATATAGATTTATCTGTGGATTTTGATCCCTCAGAACAACCAGATGTTCTGATAAATTCTCAGGACCACAGAAAGCAAGGTGAGCTCACTGAATTATCAGGACCCCTGGTATCTCAATCAAACAATATAGATGAGTCGTTACAGAGGCATGAAAATGGTATTTCTCGATCATCTCGCAAATCGAGGCTGGGAAGAGCCGGAGTAACACTGGAATATGGATTACAGATGTAA 2061 0.443 MGCINSKKAIARASPAYVHSGSLTDNRSAIAEPPSRVQSGVLIIENKAEAPSEDRSRDGKKFRKNTSKGAGSFRISHRFVEAELNAAGWPPWLTSTAGEAVHGWVPLKAESYEKLDKIGQGTYSSVFRAREVETGRMVALKKVHIDSSQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSSSLYLVFEYMEHDLAGLVSSPDIKFSETQVKCYMRQLFSGLEHCHIHGVMHRDIKTSNILVNNEGVLKIGDFGLANTLSANNRHPLTSCVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQIHKIFKLCGSPPDEFWKKYKLPHATMFKPQTHYECTLREQCKDIPVTAVNLIETLLSVDPLKRGTASSALMSEYFSTKPYACDPSILPKYPPHKEMDAKIREDACRKKIGVKVQEAAKPRKQRRVRKILHEPTNLNKSASKQEEVQNVSQNAHKDHGKAHLPKEKGGAMHRGALKPSSNASTDTTRLMDVPHGFSVPVPVSGSNGFTWTKNRKLDAASTLSDGSRSKISALDPSFAKGTYDLTRRGTEVSDRKYNDHAGHHDETSNHQQQKHQVPHGQRDSFDAAEEYHYIDLSVDFDPSEQPDVLINSQDHRKQGELTELSGPLVSQSNNIDESLQRHENGISRSSRKSRLGRAGVTLEYGLQM 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0089 686 CDD STKc_CDK9_like 112 396 - -
Dere01g0089 686 MobiDBLite consensus disorder prediction 563 601 - -
Dere01g0089 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Dere01g0089 686 MobiDBLite consensus disorder prediction 642 658 - -
Dere01g0089 686 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0089 686 MobiDBLite consensus disorder prediction 565 601 - -
Dere01g0089 686 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0089 686 MobiDBLite consensus disorder prediction 469 491 - -
Dere01g0089 686 MobiDBLite consensus disorder prediction 49 69 - -
Dere01g0089 686 MobiDBLite consensus disorder prediction 640 673 - -
Dere01g0089 686 MobiDBLite consensus disorder prediction 449 509 - -
Dere01g0089 686 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Dere01g0089 686 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Dere01g0089 686 Gene3D Transferase(Phosphotransferase) domain 1 195 436 - -
Dere01g0089 686 FunFam probable serine/threonine-protein kinase At1g54610 195 436 - -
Dere01g0089 686 MobiDBLite consensus disorder prediction 454 468 - -
Dere01g0089 686 MobiDBLite consensus disorder prediction 49 65 - -
Dere01g0089 686 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Dere01g0089 686 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0089 686 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Dere01g0089 686 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0089 Dere-ChrDere01 4303379 4309736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0089 104 442 Core Cell Cycle Gene Families AT5G10270 44.068 3.20e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere01g0089 Pkinase 7.4e-70 CL0016