Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0087 ATGGAATCAAACGAAAACAATAAATTTTGGGAATCCAATGGGAGAACCACGAAACCTTACTGGCGAGCGTCGTGGAGAAGAATCAACCAGTATTACAGTGTGCCTGGAGATAGAGATGTGAAATCGAACACGCGACGGTGCTTCCGGCGAGAGAACCCTAAAGCAGTGGGATTGGAGCAACAAAAGGAAACCAAGAAACCATCGGCTTCTTCTTCTCCTTCGTTGTGCGCATCAGTCGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGATGAAGAAAAGGGGCTTTGCAGTTTTCACGAACAGATGGAAAACATGGAAAAGGGGAACTTCTCTGAATTCTTGTCCGAGCTAATAGTTTTGGCCGATGAGGTTGCTTCCTTTGCTCAGAACTCTGAATTTGAAAGAAGTGCTTTTACTGAGTTCTCCATATTGGTTGAGGAATTTGCACCAATCTTCAGTGATTTGAGAGACCAAAGCACAGTCATGGACAAGCCACCTATTAGAAAATCGTTGGAATCTCTTGAGAATGAGCTTCGGCGTGCTCAGGCTTTGATAAAAAACCCTGATTTGAAACATCCCATTAAACAGATTGAGGACATAACTCATGATCTTGGTCGATCATTAGGCCTGCTGCTTGTGTCCAGCCTTGAGGAGTCGACAGATTTTAGAGAAAAGATCGGTGCACTGCAAAGAAAGTTGATGAGTGCAAGATTTTGTGAAAATATGAGCCCAACTTCAAATCCGAGATCAGGGCTTGTTAGTGATGTGAAGGTTGAAGGGGAAATAGAAGAGGAAATAGTCAATTTTACTGTGGACGATGTTGTATTGCAACTTAAACATGGTAGTGATGAAGAATTTGCAGTTGCACTTTTGAGACTCAAGGAATTCATCTGGGGTGAAAAAGCAGATACTGGTTTAATCAACGAGGAAGCACTTGTTGCCATTCTTTCTAATCGACTAGGTTCAAGTAAGGCACACAGTAGGCTGACCATCATCCAATTATTGAGAAGTATGGCTTCTGGCAATGATGAGAAAAAGGAAAAGATGGCAGATACAGAGTTTTTATCAGCCGTGGTGAGGTCTCTAACACGGGATGTAGAAGAGAGTAGAGAAGCAGTGGGGCTTTTGCTAGACCTCTCTGACCTTCCTGCAGTTAGGCGGCGAATTGGAAGAATTCAGGGGTGTATTGTTATGCTTGTTGCTATCCTTAATGGAGATGATCCTGTTGCTTCACATGATTCAGCAAAGTTGTTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCCGAGGCTGGTTACTTCAAGCCACTAGTGCATTATTTGAAGGAAGGGTCTGACATGACCAAGATCCTCATGGCAACAGCACTTTCCAGATTGGAGCTAACTGATCATAGCAAACTCTCCCTGGGAGAAGATGGGGCAATTGAGCCCCTAGTCAGCATGTTCACTTCTGGGAAGCTCGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATTTGTCAACCTTGACTGAAAATGCACGACGTTTGATCAGAACGGGAATTGTGGCATCTCTGCTTCAACTTCTTTTCTCTGTAACGTCGGTGCTCATGACTCTTCGGGAGCCTGCATCGGCTATTCTTGCAAGAATTGCTCAGTCAGAACCCATACTTGTTAATCAAGACGTGGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCAATAATTCAGAGTCATCTATTAGAAGCACTAGATAGCATTGCTGCCCATCCTGGTGCATTGAAAGTCAGAGGAAAAATGAAAGAAAAAGGTGCACTTCAGCTTCTTTTACCTTTTCTGATGGAAACCAACACTAAAATCCGGAGTAAGGCCTTGCAATTGCTGTACACTCTCTCCAAAGATCTAACAGAAGAATTGACAGAACATCTTGATGATACCCATTATTTTAATATTGTCAATATTATCTCATCATCAACATCAGATAATGAAAAAGCTGCTGCTGCTGGTTTACTGAATAATCTTCCTGTTAGTGATAAAAAAGTGACAGATATATTCAAGAGGGCGAATTTACTGCCCATTTTAATATCTATTATGAGTTCAAGTACAGGAAGTAGTTCATCCTCAAGTAGCTTAGCGCAGAGTGTTGCTGGTATTATAGTCCGGTTCACAAATCCTTCTGACAAGAGACTGCAACTTGTCTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAATTGCTCTCGACCGGTTCACCAATCACAAAATCCAGAGCTGCAACCTCACTCGCTCAATTTTCACAGAATTCTCTATCTCTTAGGAGGTCTAGAAAATCAAGATGGTTGTGTGTTTCTCCCTCTGTGGATACTTATTGCGAAGTTCATGATGGTTATTGCACTGTGAAAAGCACATTCTGTTTAGTCAAAGCAGGTGCTGTTCCTCCGCTTATCCAAATATTAGAAGATAAAGAGAAGGAAGCTGTTGAAGCTGCTCTGAGTGCCCTCTCAACTCTGTTGCTAGATGAAATCTGGGAAGGTGGTGTCAATTGCTTAGTTAAATCCTCAGGTGTACAGGCTATTATAAAGATTTTAGAAGTGAAGGATGTAAAGGTTCAAGAGAAAGCCCTATGGATCTTGGAGAGAATATTCAGGGTTGAAGAGCTAAAAGTTAAATATGGAGCATCTGCTCAGGTTGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAATCAGCAGTTGCAAAAGTATTAGCAGAGCTAGAGCTCTTGCAAGTTCAATCAAGTTACTTCTAG 2790 0.4186 MESNENNKFWESNGRTTKPYWRASWRRINQYYSVPGDRDVKSNTRRCFRRENPKAVGLEQQKETKKPSASSSPSLCASVEEEEEEEDEEDEEKGLCSFHEQMENMEKGNFSEFLSELIVLADEVASFAQNSEFERSAFTEFSILVEEFAPIFSDLRDQSTVMDKPPIRKSLESLENELRRAQALIKNPDLKHPIKQIEDITHDLGRSLGLLLVSSLEESTDFREKIGALQRKLMSARFCENMSPTSNPRSGLVSDVKVEGEIEEEIVNFTVDDVVLQLKHGSDEEFAVALLRLKEFIWGEKADTGLINEEALVAILSNRLGSSKAHSRLTIIQLLRSMASGNDEKKEKMADTEFLSAVVRSLTRDVEESREAVGLLLDLSDLPAVRRRIGRIQGCIVMLVAILNGDDPVASHDSAKLLDILSSNSQNALHMAEAGYFKPLVHYLKEGSDMTKILMATALSRLELTDHSKLSLGEDGAIEPLVSMFTSGKLESKLSALNALQNLSTLTENARRLIRTGIVASLLQLLFSVTSVLMTLREPASAILARIAQSEPILVNQDVAQQMLSLLNLSSPIIQSHLLEALDSIAAHPGALKVRGKMKEKGALQLLLPFLMETNTKIRSKALQLLYTLSKDLTEELTEHLDDTHYFNIVNIISSSTSDNEKAAAAGLLNNLPVSDKKVTDIFKRANLLPILISIMSSSTGSSSSSSSLAQSVAGIIVRFTNPSDKRLQLVSAEHGVIPLLVKLLSTGSPITKSRAATSLAQFSQNSLSLRRSRKSRWLCVSPSVDTYCEVHDGYCTVKSTFCLVKAGAVPPLIQILEDKEKEAVEAALSALSTLLLDEIWEGGVNCLVKSSGVQAIIKILEVKDVKVQEKALWILERIFRVEELKVKYGASAQVVLIDLAQKSDSRLKSAVAKVLAELELLQVQSSYF 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0087 929 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 476 518 IPR000225 GO:0005515
Dere01g0087 929 Gene3D - 415 777 IPR011989 -
Dere01g0087 929 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 808 835 IPR000225 GO:0005515
Dere01g0087 929 MobiDBLite consensus disorder prediction 35 94 - -
Dere01g0087 929 MobiDBLite consensus disorder prediction 39 61 - -
Dere01g0087 929 SUPERFAMILY ARM repeat 508 884 IPR016024 -
Dere01g0087 929 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 276 929 - -
Dere01g0087 929 Pfam Armadillo/beta-catenin-like repeat 803 835 IPR000225 GO:0005515
Dere01g0087 929 MobiDBLite consensus disorder prediction 63 77 - -
Dere01g0087 929 Gene3D - 786 925 IPR011989 -
Dere01g0087 929 MobiDBLite consensus disorder prediction 78 93 - -
Dere01g0087 929 SUPERFAMILY ARM repeat 264 642 IPR016024 -
Dere01g0087 929 Gene3D - 282 409 IPR011989 -
Dere01g0087 929 SMART arm_5 591 631 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 342 381 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 841 881 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 465 505 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 424 464 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 724 765 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 506 549 IPR000225 GO:0005515
Dere01g0087 929 SMART arm_5 797 837 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0087 Dere-ChrDere01 4259669 4266132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0087 312 929 U-box Gene Family AT1G76390 29.154 7.87e-50 187