Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0086 ATGGATATGAAGTACAATATGGAATTGAGAATGGATGGATCAACTGGCCGAGGCAGCAGCGTGGACATATTTTTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGCCATAAAGTTGCCATTAAGATCCTTAATCGGCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTAAGAAGGGAAATCAAAATATTAAGATTGTTCATGCATCCTCACATTATACGACTTTATGAAGTCATTGAAACTCCAACAGACATATATGTCGTTATGGAGTATGTTAAATCCGGGGAGCTGTTTGACTACATAGTTGAAAAGGGTAGGCTGCAAGAAGATGAAGCCCGTAATTTTTTCCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGCAACATTAAGATTGCTGATTTTGGTTTGAGCAATATCATGCGTGATGGTCACTTTCTTAAGACAAGCTGTGGAAGCCCAAACTATGCAGCTCCAGAGGTTATATCTGGAAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGTACTCTTCCTTTTGATGATGAAAACATTCCAAACCTCTTTAAGAAAATAAAGGGTGGGATTTATACTCTTCCCAGTCATCTATCGCCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATGAAGAGAATGACCATACCTGAGATTCGCCAACACCCATGGTTCCAAGCTCGTCTCCCTTGTTATTTGGCAGTGCCACCACCAGATACAATGCAACAAGCCAAAAAGATTGACGAGGAAATTCTTCAGGAAGTGGTTAGCATGGGATTTGACAGGAATCAACTTGTTGAATCTCTTCGCAACCGGATACAAAATGAGGGTACTGTAGCATACTATTTGTCATTGGACAATCGATTCCGAGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGTTATAACCGTATTCATCCCGGTGAAACTCCAGCTGTTGCTCATCGCTTTGGGTATATGGATTATCCAGGAGCAGGGTTGAGACCCCAGTTCCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGTCTCGTGCTCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGTTGGAAAAAGATTGGACACTACAACATGAAGTGCAGATGGATTGCTGGAGGTGCTGGTCATGATGGAATGGTGGACAATACTTTGTATGGTAATCATTACTATAGAGATGATTCGACTATCATTGAGAATGATGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTTCAGCTTTACAAAACTCGGGAGGAGAAATATCTTCTCGATCTTCAAAGGGTCCAGGGCCCGCAGTTTCTCTTTTTGGATCTTTGTGCTGCTTTCCTTGCGCAGCTTCGTGTCCTCTAG 1560 0.4173 MDMKYNMELRMDGSTGRGSSVDIFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPCYLAVPPPDTMQQAKKIDEEILQEVVSMGFDRNQLVESLRNRIQNEGTVAYYLSLDNRFRVSSGYLGAEFQETMDSGYNRIHPGETPAVAHRFGYMDYPGAGLRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWIAGGAGHDGMVDNTLYGNHYYRDDSTIIENDAVSKSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0086 519 CDD STKc_AMPK_alpha 25 280 - -
Dere01g0086 519 CDD UBA_SnRK1_plant 302 342 - -
Dere01g0086 519 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 470 518 IPR001772 -
Dere01g0086 519 FunFam Non-specific serine/threonine protein kinase 19 358 - -
Dere01g0086 519 SUPERFAMILY UBA-like 290 338 IPR009060 GO:0005515
Dere01g0086 519 SMART uba_6 303 340 IPR015940 -
Dere01g0086 519 SUPERFAMILY KA1-like 337 518 IPR028375 -
Dere01g0086 519 SUPERFAMILY Protein kinase-like (PK-like) 24 297 IPR011009 -
Dere01g0086 519 PANTHER SERINE/THREONINE KINASE 27 345 - -
Dere01g0086 519 Pfam Protein kinase domain 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0086 519 Gene3D Transferase(Phosphotransferase) domain 1 19 358 - -
Dere01g0086 519 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Dere01g0086 519 FunFam Non-specific serine/threonine protein kinase 401 517 - -
Dere01g0086 519 Gene3D Kinase associated domain 1, KA1 401 517 - -
Dere01g0086 519 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 301 341 IPR015940 -
Dere01g0086 519 CDD AMPKA_C 395 516 - -
Dere01g0086 519 Pfam UBA/TS-N domain 302 338 IPR015940 -
Dere01g0086 519 SMART serkin_6 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0086 519 FunFam Non-specific serine/threonine protein kinase 19 107 - -
Dere01g0086 519 ProSiteProfiles Protein kinase domain profile. 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0086 519 Pfam Kinase associated domain 1 476 518 IPR001772 -
Dere01g0086 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0086 Dere-ChrDere01 4246192 4257674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0086 28 280 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 1.39e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Dere01g0086 Pkinase 8.5e-81 CL0016