Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0084 ATGGCAAGAAAAAGAAAGGCTAGTGGTAGTGTTGAAGAAGAGGTAGTGGAAGAGAGGAATGGTTGTGAGGGAGGCATGGGGTGGGAGGAGATGGTGAAGGAGGCTGAGGTGGCGGTGGGAGGGCTCCGGCGAGGCTGGAGGAGGTTCGTGGGGGTGCGGCAGAGGCCGTCAGGGAGGTGGGTGGCGGAGATAAAGGACACCATACAGAAGATAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGAAGCAGCCAGAGCATATGATGAAGCTGCTTGCTTGCTACGTGGAGCCAACACTAAAACAAATTTCTGGCCTGTTCAATCTCAGTCCAATTCGTCCACTCCTGTTCTTCCCTCGAAGATCACCAATCTCCTCCTTCAAAGACTCAAAGCAAGAAATAACCACAACCATAACCATAGCTCTTTCCCTTCTTCTTCTGTTTCTTCTTCTCTTGTTAATCAACAACAGAAGCAGGAAGCAGAGGAGGAGAAAACAGAGTTCTCAATTGACCAGTTCTCTGACTTTCTAAATGATACTGAAGATTATTACACCACAAGCAGCAATAACAGCGAGCAATTTGATTACATTACTCGTAGTTTCGAGTCTTGTTTAACTGAGAGCGATGAGTCCAAGGAAAGAGCAGAGAAAATGGGCAGTTCAGGAGGGGAAAAAGAGGAAGAGAGTGAGGAAGAAAGCAGTAGTGAGGTTGCTGTGGGGGTGCAGGATTTTGAATTCCTGGACAGTGTCGTGCCATCAGGTAACATCTATTATTGTCCATTTGAGATGGCTCAAGAAATGGAGGAGGAGGAGGAGAATGTGGAAGAGGCAGAGAGCTATGGTGGGGATGAGCCTTGTATGCTGAGAGCAGCCATGAAGAGGTTGAAGTATGAGAGGAAGTTCTCGGCTTCTCTCTATGCCTTTAACGGCATATCTGAATGCTTGAAGGTGAAAATTGGATCAGCAAACTCTAAAGGAAGAGGAGTTTCTGAGCAGCTAAGTAATCTGCAGATGGCATGTTCAAGCAAGAACAAAATTGAGAATAAGGAGATAATTAGGAAGGAAGAAGAAAATCAACAAGCATCAATTGATCATATAGAGTCTTCTTCTACTTCATCATCTTCTTTATCTGGTATTGATGAAGTGTTGCTTTGGAATTCGCTGGATCTTCCTCCAATCTGCTTTGTTAACTAA 1194 0.4556 MARKRKASGSVEEEVVEERNGCEGGMGWEEMVKEAEVAVGGLRRGWRRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTKTNFWPVQSQSNSSTPVLPSKITNLLLQRLKARNNHNHNHSSFPSSSVSSSLVNQQQKQEAEEEKTEFSIDQFSDFLNDTEDYYTTSSNNSEQFDYITRSFESCLTESDESKERAEKMGSSGGEKEEESEEESSSEVAVGVQDFEFLDSVVPSGNIYYCPFEMAQEMEEEEENVEEAESYGGDEPCMLRAAMKRLKYERKFSASLYAFNGISECLKVKIGSANSKGRGVSEQLSNLQMACSSKNKIENKEIIRKEEENQQASIDHIESSSTSSSSLSGIDEVLLWNSLDLPPICFVN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0084 397 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Dere01g0084 397 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Dere01g0084 397 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Dere01g0084 397 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Dere01g0084 397 MobiDBLite consensus disorder prediction 136 171 - -
Dere01g0084 397 MobiDBLite consensus disorder prediction 205 238 - -
Dere01g0084 397 MobiDBLite consensus disorder prediction 205 224 - -
Dere01g0084 397 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Dere01g0084 397 SUPERFAMILY DNA-binding domain 49 105 IPR016177 GO:0003677
Dere01g0084 397 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Dere01g0084 397 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 301 - -
Dere01g0084 397 MobiDBLite consensus disorder prediction 136 157 - -
Dere01g0084 397 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Dere01g0084 397 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0084 Dere-ChrDere01 4242897 4244090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0084 48 126 AP2-EREBP Transcription Factor Family AT5G19790 71.951 2.61e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g0084 AP2 9.2e-15 CL0081