Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0079 ATGTGTATGATGGGACAAGGAGTGAGAAAAGGTGCTTGGTCTAAAGAAGAAGATGACCTTCTAAGGGCCTGCATTGAACACTATGGTGAAGGCAGATGGCACCTTGTTCCTCAGAGAGCAGGCTTGAATAGATGCCGGAGAAGCTGTAGACTGAGGTGGATGAACTATTTAAAGCCAGATATCAAGAGAGGAATGTTCAGTGAAGATGAAGTTGATATGATAATGAGGTTGCATAGGCTCTTGGGAAACAGATGGTCGCTGATTGCTGCGAGGCTTCCAGGAAGAACACCAAATGATGTGAAAAATTACTGGAACACCAACCAGAGGAAGAAGCAGCAATATTACTCATCATTCTCTGAAAACTGTAAGGATAAAAGCAAAGCGAAAGAAGAGGGAAGCACGAGAGGTCACCAAGTAATAAAGCCTCAACCTCTAACTTTCTCGAGAACATCGTCGTGGTCGACGATAAGGAGACCCATTGCTGCTGCTGCAACTGTTGATGATAATAATAATAATAATGAAAGAGATAAGCTGCCACGTGGAGGTTCCCCAGGAGAAGCAGAGAATCCGAGAGAGTGGTGGGAAAGTTTGCTCCATGACGACGTTCACGAAGGTGATAGCTTGTGGTGTTTGGATGCTGAGAAGCAGACTCACTTCTGGGATGAACAATTTGAATAG 678 0.4454 MCMMGQGVRKGAWSKEEDDLLRACIEHYGEGRWHLVPQRAGLNRCRRSCRLRWMNYLKPDIKRGMFSEDEVDMIMRLHRLLGNRWSLIAARLPGRTPNDVKNYWNTNQRKKQQYYSSFSENCKDKSKAKEEGSTRGHQVIKPQPLTFSRTSSWSTIRRPIAAAATVDDNNNNNERDKLPRGGSPGEAENPREWWESLLHDDVHEGDSLWCLDAEKQTHFWDEQFE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0079 225 CDD SANT 66 107 IPR001005 -
Dere01g0079 225 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Dere01g0079 225 Gene3D - 65 138 - -
Dere01g0079 225 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Dere01g0079 225 CDD SANT 12 57 IPR001005 -
Dere01g0079 225 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Dere01g0079 225 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Dere01g0079 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Dere01g0079 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 165 - -
Dere01g0079 225 MobiDBLite consensus disorder prediction 164 192 - -
Dere01g0079 225 FunFam Myb transcription factor 10 62 - -
Dere01g0079 225 Gene3D - 10 62 - -
Dere01g0079 225 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dere01g0079 225 SMART sant 9 59 IPR001005 -
Dere01g0079 225 SMART sant 62 110 IPR001005 -
Dere01g0079 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0079 Dere-ChrDere01 4174661 4177952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0079 6 202 MYB Transcription Factor Family AT1G66370 47.393 8.12e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g0079 Myb_DNA-binding 1.3e-14 CL0123