Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0077 ATGGATTTTGCCTTGGTTTTTGTGCTGTGTGTCTCTATTATGCTTTGTTGTCTTGTACCCAGGTGGTCGGCTATTGCCACACACTTGCCAAAGAGAACTGATAACGAGATCAAGAACTACTGGAATACGCATCTCAAGAAAAGATTAGCCAAAATGGGAATTGACCCGGTGACCCACAAACCCAAGCATGATGCCCTTCTCTCTCGCGATGGCAGCCAATCCAAGAGCGCCGCCAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGTTAGGGAATCCAAACTTCGTTCATCACAGTCATTTGCATCTTTGTCTTCCGCCTCATCTTCTGCTCATCCAGTTCTCAAGGCTTGGAATGGTGGGTGGCTAAAATCCGCTGATCAATGCATTAATCATGGGGGTGACCTTGAATCTCCAAAATCTACTCTAACCCTCTCTGAGAACGCCGCACCTATTATGCCAATGATTGAGTTCGTGGGTACTTCGGGTTCCTGTGAGGCAGCAGGTATTGTGAAAGAAGAAGGTGATCAGCATGAATGGCATAATGGTATAGAGAACTCAATGTCTTTTACATCTAGCCTGCATCATGAGTTGACAATGTCCAATGTGGAAGGCACATGGACCTCCCATGAGCCTCCTCTTCGGACTAGCACTGGTGGGGGTGCTATTGCTGAGGATCAGGGATTCACCAATCTGTTGCTTTATACAAACTCTGATGACCGGAGCTTGTCGGAGGACGGCGGAGGAGAGTCTAACAATTGGGATGGTAGTGGCAGTGGTAGTGGCAGTGGGAGTGACGTCTTGTGTGAAGACAATAAGAACTACTGGAACAGCATTCTTAATTTAGTGAACTCTAATTCCCCTTCTCATTCCCCTGTGTTCTAA 909 0.4763 MDFALVFVLCVSIMLCCLVPRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKHDALLSRDGSQSKSAANLSHMAQWESARLEAEARLVRESKLRSSQSFASLSSASSSAHPVLKAWNGGWLKSADQCINHGGDLESPKSTLTLSENAAPIMPMIEFVGTSGSCEAAGIVKEEGDQHEWHNGIENSMSFTSSLHHELTMSNVEGTWTSHEPPLRTSTGGGAIAEDQGFTNLLLYTNSDDRSLSEDGGGESNNWDGSGSGSGSGSDVLCEDNKNYWNSILNLVNSNSPSHSPVF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0077 302 MobiDBLite consensus disorder prediction 248 274 - -
Dere01g0077 302 SUPERFAMILY Homeodomain-like 20 53 IPR009057 -
Dere01g0077 302 Gene3D - 10 77 - -
Dere01g0077 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 49 IPR017930 -
Dere01g0077 302 CDD SANT 21 45 IPR001005 -
Dere01g0077 302 ProSiteProfiles Myb-like domain profile. 21 45 IPR001005 -
Dere01g0077 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 181 - -
Dere01g0077 302 Pfam Myb-like DNA-binding domain 21 45 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0077 Dere-ChrDere01 4129146 4130054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0077 21 302 MYB Transcription Factor Family AT3G01140 46.690 3.23e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g0077 Myb_DNA-binding 2.2e-06 CL0123