Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0076 ATGGGTCGATCACCATGCTGTGACAAGGTGGGCTTAAAGAAAGGACCATGGACTCCTGAAGAAGATCAGAAACTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGAGCCTTGCCAACTAAAGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGACTGAGGTGGACCAATTATCTTAGGCCTGATATTAAGAGGGGGAAGTTCAGTATGCAAGAAGAGCAAACCATCATCCAACTCCATGCCCTCCTAGGAAACAGGTTTTGTATGCTTAATCCTTATGAAGTTATCTATCTATAA 303 0.4521 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRFCMLNPYEVIYL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0076 100 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
Dere01g0076 100 CDD SANT 16 61 IPR001005 -
Dere01g0076 100 Gene3D - 13 66 - -
Dere01g0076 100 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere01g0076 100 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere01g0076 100 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dere01g0076 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 89 - -
Dere01g0076 100 SMART sant 13 63 IPR001005 -
Dere01g0076 100 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0076 Dere-ChrDere01 4128140 4128565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0076 1 92 MYB Transcription Factor Family AT3G01140 90.217 8.28e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g0076 Myb_DNA-binding 1.8e-16 CL0123