Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0060 ATGTCTTCTGATTCTGAAGCCAACTTCACCGATTCATCATCTCTTACTGCATTGCAATTGGATGAGCCTCAAATTCGAAGATTGTCTCTACTTCTCCCTCTGATTCTTGGGTTAGCACCTCCTCGTCAAACCCCAGAATCCGAGACTGCTAGCCACCGTGGTCGAGTCCGGATCATCATAGTTGACCCTTCTGCTGGAGCCATGATCGTGATCGAAGGCTCTGGAGATCTCCAATCCATGTTCCAAGGGCTATCGGGGAAGTCCGGGGTGTTGCCGGCGTCCAAGGACTCGATTCAAGCCATGCCCAGAGTTGAGGTGACCGAAGAAGGCACGGATTGTTCGATCTGCTTGGAAGCTTACGATGTAGGCGGCGAAGCTAGGGAGATGCCTTGCAAGCATAAGTTTCACTCTGGGTGTATTGAGAAGTGGTTAGGGCTCCATGGGTCGTGCCCAATCTGCCGGTTTCTGATGCCGGTGGAGGAAGAAAACAAAAGCGCCGCCGGAAGCGACGGGGAGCAAGACGGCGGCGAGAGGAGGGAGAGCGATGAGGGGTTGGTGTCTGTGAGTGTATGGGTTAGATCCATCGACGAAGATGATGATCCGATGGATGTGGATTCGGAGGCGGAACATGGATCCGGGGAATCCAATAGTGATTCTCGAGGGGGAAATTCTGCAGTTGATGATGACTCATCGATGAATCAGGAGCCGCAAGACATGGAATTCTGA 726 0.5262 MSSDSEANFTDSSSLTALQLDEPQIRRLSLLLPLILGLAPPRQTPESETASHRGRVRIIIVDPSAGAMIVIEGSGDLQSMFQGLSGKSGVLPASKDSIQAMPRVEVTEEGTDCSICLEAYDVGGEAREMPCKHKFHSGCIEKWLGLHGSCPICRFLMPVEEENKSAAGSDGEQDGGERRESDEGLVSVSVWVRSIDEDDDPMDVDSEAEHGSGESNSDSRGGNSAVDDDSSMNQEPQDMEF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0060 241 FunFam E3 ubiquitin-protein ligase RNF181 82 160 - -
Dere01g0060 241 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Dere01g0060 241 MobiDBLite consensus disorder prediction 215 241 - -
Dere01g0060 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 159 IPR013083 -
Dere01g0060 241 MobiDBLite consensus disorder prediction 165 184 - -
Dere01g0060 241 SMART ring_2 113 153 IPR001841 -
Dere01g0060 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 158 - -
Dere01g0060 241 MobiDBLite consensus disorder prediction 164 241 - -
Dere01g0060 241 Pfam Ring finger domain 112 154 IPR001841 -
Dere01g0060 241 SUPERFAMILY RING/U-box 106 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0060 Dere-ChrDere01 3767683 3768408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0060 1 193 C3H Transcription Factor Family AT1G26800 40.306 3.38e-40 135