Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0049 ATGATCCAGAATCATGGTTATGAAGAGAGGGGTTCTTCAGATGTCACCGGAAAAGTGGTGGTGGTGGCAGTCAAAGCTTCGAAAGAGATTTCGAGGACTGCTTTAGTGTGGGCTTTGACTCATGTTGCTCAACCTGGGGATTGCATTAAGCTTTTGGTCCTCATTCCGGCTCTCTCCTCAAGTAAAAGAATATGGGGCATATCAAGATTTACCACCGATTGCACATCCAATCACTGGAGATCCCACTTAGGAACTGCTTCAGATCAGAAGGAAACAGTTGCCAATTCATGTTCTCAATTGGTGCTTCAACTCCATGATTATTATGATCCACAAAAGATAAAGATTAGAGTAAAGATTCTTTCTGGTTCTTTATGTGGAGCAGTGGCTGCAGAAGCCAAGAGAGTCCAATCAAGCTGGGTTATATTGGACAAAAAATTGAAAAATGAAAAAAAATTCTGCATGGAGGAGCTGCGTTGCAATATTGTAATTATGAAGGGATCTCGGGCAGAGGTTCTTCGTTTGAATTTGATCAGTTCACCAAAAACAGAACTTGAAGGGGGTTGTCCGTTGTCACCGGAGCTGAATGAATATCCAAGAAACATAAAAGGCAAGTCTGAGTACCGAGATATGATCCCAGGTCCAGCTGTTACTCCTGCAAGTAGTCCAGAACATGGGTCACCATTAACTGCAACTGATGTTGGAACATCGTCATTATCAAGCTCAGATCCTGGGACTTCACCATTTTTCCACTCTGATATATATGGGAGACGAAGGAGAGACTTTCCCTTTGTTCATGAAGAACTTAAAAATCTGGAGGAAAGTGAATCTGACTCAGAAAGTGAGAAGCTGAGTCTGTCATCCAAAAGTTCATATTGCCAACCATGGATTGCTGATGTAATGAATACTGATGGCGAATTCTCAAAACATACTAACAGTATGCACAGATCCAGTGATAAGGCTTTGGTGTCTGCCTATGAAACCTTGCTTCAGAAAGTCTCCAAGTTGGATCAAGAACCTAGTATAGGAGTGTTTCATTGTAAAATTGATGTTAACTTGAGCAAAAGTGTTAGAGAAGCAATTTCCCTGTCAAGAAACGCTCCTCTTGGCCCTCCTCCATTGTGCTCTATTTGTCAGCACAAGGCACCTGTATTTGGGAATCCTCCAAGGTGGTTTACATATGCTGAACTGCAACTTGCCACAGGGGGATTTTCACAAGCAAATTTCTTGGCTGAAGGTGGGTTTGGCTCTGTACATCGTGGTGTCCTACCTGATGGGCAGGTCATTGCTGTCAAGCAGTATAAATTAGCCAGTACTCAAGGTGATAAAGAATTTTGCTCTGAAGTTGAGGTCTTAAGCTGTGCACAGCATCGTAATGTCGTAATGCTAATTGGATTTTGTGTGGAGGATGGAAGAAGATTGCTAGCTTATGAATATATCTGCAATGGGTCTCTAGATTCTCATCTTTATGGACGAAACCAGAATGTATTGGAATGGTCTGCAAGGCAAAAGATTGCAGTTGGGGCAGCTCGGGGTTTGAGGTACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGAGATATGCGGCCTAACAATATTCTTCTAACTCATGATTTTGAAGCCCTAGTGGGAGATTTTGGACTTGCTAGATGGCAGCCTGATGGAGACATGGGTGTGGAAACCAGGGTGATTGGAACATTTGGGTATTTGGCCCCAGAATATGCTGAAAGTGGTCAGGTCACTGAAAAAGCTGATATATATTCCTTTGGGGTAGTCCTTCTGGAGCTTGTTACTGGATGGAAAGCTATTGATATAAACCGACCCAGAGGTCAGCAATGCCTCACTGAATGGGCACGGCCACTGCTTGAAAGAGATGCCATTCACAAACTGGTTGATCCGAACTTGAAAAATTGCTATATCGGCCAGGAGGTTCATCGCATGATGCTTTGTTGCTCATTGTGTATCCAACGGGATCCTCAGTTTAGGCCTCGAATGTCTCAGGTGCTCCGGATGCTGGAAGGTGACATTCTCATGTGA 2040 0.4343 MIQNHGYEERGSSDVTGKVVVVAVKASKEISRTALVWALTHVAQPGDCIKLLVLIPALSSSKRIWGISRFTTDCTSNHWRSHLGTASDQKETVANSCSQLVLQLHDYYDPQKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDKKLKNEKKFCMEELRCNIVIMKGSRAEVLRLNLISSPKTELEGGCPLSPELNEYPRNIKGKSEYRDMIPGPAVTPASSPEHGSPLTATDVGTSSLSSSDPGTSPFFHSDIYGRRRRDFPFVHEELKNLEESESDSESEKLSLSSKSSYCQPWIADVMNTDGEFSKHTNSMHRSSDKALVSAYETLLQKVSKLDQEPSIGVFHCKIDVNLSKSVREAISLSRNAPLGPPPLCSICQHKAPVFGNPPRWFTYAELQLATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLAYEYICNGSLDSHLYGRNQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAESGQVTEKADIYSFGVVLLELVTGWKAIDINRPRGQQCLTEWARPLLERDAIHKLVDPNLKNCYIGQEVHRMMLCCSLCIQRDPQFRPRMSQVLRMLEGDILM 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0049 679 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 679 - -
Dere01g0049 679 Pfam Protein tyrosine and serine/threonine kinase 407 673 IPR001245 GO:0004672|GO:0006468
Dere01g0049 679 PANTHER OS01G0750732 PROTEIN 297 677 - -
Dere01g0049 679 MobiDBLite consensus disorder prediction 222 244 - -
Dere01g0049 679 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0049 679 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Dere01g0049 679 MobiDBLite consensus disorder prediction 205 244 - -
Dere01g0049 679 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
Dere01g0049 679 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Dere01g0049 679 Gene3D Transferase(Phosphotransferase) domain 1 479 677 - -
Dere01g0049 679 SUPERFAMILY Protein kinase-like (PK-like) 383 674 IPR011009 -
Dere01g0049 679 CDD STKc_IRAK 409 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0049 Dere-ChrDere01 3640067 3645447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0049 362 669 Trihelix Transcription Factor Family AT1G68690 49.679 2.49e-98 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Dere01g0049 PK_Tyr_Ser-Thr 4.2e-40 CL0016