Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0048 ATGGCGAGGAAGTGCTCACATTGTGGGAACATCGGCCATAATTCAAGGACGTGCACATCTTTCAGAGGTACTTTTGTAGGGCTTCGACTCTTCGGTGTTCAACTTGACATATCCTCTTCTTCCTGTGTTGCCATCAAGAAAAGCTTTAGCATGGACTCTTTGCCCTCTTCCTCGTCTCCATCTTCCTCATTTTCTTCCTCAAGATTAACCATCGATGAGAACTCTGATAGAATCTCCCTTGGCTATCTCTCCGACGGTCTCTTGGGCCGAGTACAAGACAGGAAAAAAGGAGTTTCATGGACAGAAGAGGAGCATCGAGCATTCCTTGTAGGACTAGAGAAGCTGGGGAAAGGAGACTGGAGGGGTATCTCTAGAAACTATGTCACCACCAGAACCCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTTCGACTCGCAAACATTCATAAGAAGAAGCGACGTTCAAGTCTTTTTGATATGGTTGGTAGTAGCAACAACTCCAGCACTGAAGATCGTAATCCAAATAAGGCCGGCGATTCAAAATATGAAGTCGAGAATATTGATACTGCTTTGCAACTGCTAGGCCATAGCTACTTTGAAATGGAAGAAGCCAAATCATCAGATGATAAGCAAACAGAAGAAAACGATCATGATGATGATTGTTCTCATTCTGAATCTCAAGGAGGAGTGAATGAGTTGGTACATGCTCAGATGAAATCTTCAAATGCAGCACTTGATCTGGAGCTCACTCTTGCAGCCCCTAATAACACTAACACCCTCCAGCAGCAAAATACCCTTCTTGGCCCGATTAGCGTCACTTGA 828 0.4444 MARKCSHCGNIGHNSRTCTSFRGTFVGLRLFGVQLDISSSSCVAIKKSFSMDSLPSSSSPSSSFSSSRLTIDENSDRISLGYLSDGLLGRVQDRKKGVSWTEEEHRAFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRLANIHKKKRRSSLFDMVGSSNNSSTEDRNPNKAGDSKYEVENIDTALQLLGHSYFEMEEAKSSDDKQTEENDHDDDCSHSESQGGVNELVHAQMKSSNAALDLELTLAAPNNTNTLQQQNTLLGPISVT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0048 275 MobiDBLite consensus disorder prediction 204 229 - -
Dere01g0048 275 SMART sant 96 146 IPR001005 -
Dere01g0048 275 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Dere01g0048 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Dere01g0048 275 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Dere01g0048 275 MobiDBLite consensus disorder prediction 161 175 - -
Dere01g0048 275 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Dere01g0048 275 SUPERFAMILY Homeodomain-like 93 149 IPR009057 -
Dere01g0048 275 MobiDBLite consensus disorder prediction 204 227 - -
Dere01g0048 275 CDD SANT 99 144 IPR001005 -
Dere01g0048 275 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Dere01g0048 275 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 146 IPR006447 GO:0003677
Dere01g0048 275 MobiDBLite consensus disorder prediction 161 185 - -
Dere01g0048 275 Gene3D - 98 150 - -
Dere01g0048 275 FunFam transcription factor MYB1R1 98 149 - -
Dere01g0048 275 PANTHER TRANSCRIPTION FACTOR KUA1 3 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0048 Dere-ChrDere01 3632908 3634140 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g0048 Myb_DNA-binding 2.8e-11 CL0123