Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0030 ATGGCTCTACCTCCAGCAGTGCAATGCCCCAGTTCGACAATTTCACCTCCACTCCCCTTACCTCTTTCCTTCCTTAAATTCCGATGTTCGCCTCCCAAATGCTTCTTATTTACACGACCTGCCCTCCGTCCCCTCCGCTTCCACTACCGGCGATTCTACCCCTCTGTGACGGCCGCCCTCCCCACCTCTGATACTTTGGCAACCTCCGCTACTGAAGGTGACAAGAAGCTGCTGCTTCAAGTCAATGATTTGAGGGCCAAGATTGTGGAATCCGATGTAGAAATTCTTCATGGTGTTAACCTCGTCATCAACGAAGGAGAGGTTCATGCGATCATGGGAAAGAACGGTTCTGGAAAGAGCACTTTTGCAAAGGTTCTTGTTGGTCATCCAGATTATGAAGTTACTGGAGGCAGTGTCTTGTTCAAAGGGGAGAATCTGCTTGACATGGAACCTGAGGAAAGATCACTTGCTGGCCTTTTTATGAGCTTCCAGTCCCCTGTTGAGATACCCGGTGTTTCTAATGATGAGTTTTTGGTTATGGCTTATAACGCTCGAAGAAGAAAACTTGGCCTGCCTGAGCTTGGTCCACTTGAGTGCTTTTCTTACCTTATGGAGAAACTCAAACTTGTAAACATGAAGCCAGACTTTCTTAATAGAAATGTAAATGAAGGATTTAGTGGTGGTGAGCGGAAGCGCAATGAGATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGATGAAATTGATTCTGGATTGGATGTTGATGCACTGAGAGATGTAGCAAATGCAGTGAATCAGATTCTAACCCCAAAAAATTCTCTGTTGATGATAACTCATTATCGACGAATTCTAGATCTCCTAAATCCTACCCATGTTCATATCATGGACAAGGGGAAGATTGCAAAGACAGGTGACCTATCCATGGTTGAAGTTATTGAGACAGAGGGATATGAAACAGTATCTGCTTAA 978 0.4519 MALPPAVQCPSSTISPPLPLPLSFLKFRCSPPKCFLFTRPALRPLRFHYRRFYPSVTAALPTSDTLATSATEGDKKLLLQVNDLRAKIVESDVEILHGVNLVINEGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVLFKGENLLDMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNQILTPKNSLLMITHYRRILDLLNPTHVHIMDKGKIAKTGDLSMVEVIETEGYETVSA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0030 325 Pfam ABC transporter 96 250 IPR003439 GO:0005524
Dere01g0030 325 Gene3D - 78 324 IPR027417 -
Dere01g0030 325 SMART AAA_5 105 302 IPR003593 GO:0016887
Dere01g0030 325 ProSitePatterns ABC transporters family signature. 225 239 IPR017871 GO:0005524|GO:0016887
Dere01g0030 325 CDD ABC_FeS_Assembly 79 320 IPR010230 GO:0005524
Dere01g0030 325 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 325 IPR003439 GO:0005524
Dere01g0030 325 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 64 324 IPR010230 GO:0005524
Dere01g0030 325 NCBIfam Fe-S cluster assembly ATPase SufC 79 322 IPR010230 GO:0005524
Dere01g0030 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0030 Dere-ChrDere01 3453454 3456092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0030 92 310 Calmodulin-binding Proteins AT2G36910 24.138 1.41e-08 54.3