Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0028 ATGCCAATTAGTCAGATTCATAGGAGAGACAAAACAATGAAGACGCAGGCAGAAGGTCCCGGAGCCGGAGCTGCCTCTGCCACTGCTCCACCGAATCCCTGCGAAGGAGCAGAGAAGAAGAGCATAAATCCAGAACTTTGGCAAGCTTGTGCGGGGCCACTGGTGAACCTGCCTCCAGCTGGTACTCACGTCGTGTACTTCCCTCAAGGTCACAGCGAACAGGTTGCAGCATCTTTGAAGAAGGATGTGGATGCCCAGATCCCAAACTATCCAAATCTCCCCTCAAAGTTACTTTGTCTCCTTCACAATGTAACCTTGCATGCTGACCCAGAAACTGATGAAGTATATGCTCAGATGACACTTCAACCAGTGCCTTCTTTTGACAAGGATGCATTATTAAGATCAGATCTTGCTCTCAAGTCAAGTAAATCACAACCTGAGTTTTTCTGTAAGCAATTGACGGCGAGTGATACAAGTACTCATGGAGGCTTTTCTGTACCCCGCCGGGCAGCAGAGAAGATTTTCCCTTCTCTTGATTTCTGTAAGCAACCACCTGCTCAAGAACTTGTGGCCAGGGATTTGCATGACAATGTTTGGACTTTCCGCCATATATATCGTGGACAACCAAAGCGTCACTTACTTACAACTGGATGGAGTCTATTCGTCAGTGGAAAGAGGCTATTTGCTGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTCTGGGTATCAGACGAGCTAACAGACAACCCACCAATATATCATCCTCAGTACTATCAAGTGATAGCATGCATATTGGAATTCTGGCAGCAGCAGCTCATGCTGCTGCAAACAACAGCCCCTTCACTGTGTTTTATAATCCTAGGGCTAGTCCCTCTGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTATAGCCACCAAATATCACCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCCGTGAGATGGAAAAATTCACAATGGCGTAACTTGCAGGTTGGTTGGGATGAATCAACTGCTGGAGAAAGGCGTAGTAGGGTTTCAATCTGGGAAATTGAACCAGTTACTGCTCCATTTTTCATATGTCCACCTCCATTCTTCAGATCCAAGCGGCCAAGACAACCAGGAATGCCCGATGATGATCCTTCCGATTTTGATAACCTTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAAGATCCTCAAGCAGTTCCTGGCCTAAGCTTAGTTCAATGGATGAACGTGCAGCAAAATCCTGCTCTGTCTAGCTCATTGCAGCCGAATTACATGCAATCCCTGCCTGGATCTGTTCTGCAAAATCTTCCTGGTGCGGATATTGCCCGTCAGCTGGGATTTTGTACTACACAGATTTCTCATTCAAACAATGTAGGCTTCAATCCTCAGAGGTTACTTCAGACTCCACAACAGCTTGAACATCTTCAGAATTTGGGTCAGAAGATACCGTCTGCATCTAGCCCATTGGGAACAGTCATGCAGTCACAGCAATCGTTGGGTGATATTACTCAGCAACCTAGGCAGAATTTGGCAAGTCAAACTGTGCCACAGAGTCAAGTTCAGACCCAACTTCTGCACCCACACAATCTTGTTCAAACTAACAATATTCTTCAACAGCAGCAACCATCCATTCAGAACCATCAATTGCATAGAAATGTCTCTCAGAACCTGCCCCAGCTGCAGCAGCAACAGACAATTATTGGTCAGAATCAACAGCAAAATCTGATTCAGTCCCCAATGCCTGATCATGTCAATCAACAATTGCAGATGTCTGACAACCAGATTCAGCTTCAATTGTTGCAGAAGCTTCAACAACAACAACAAACACTCTTGGCACAACAATCGGTATTGCAGCAGCCCACTCAACTTCATCAAATCCAAGACCAGCAGAGGCAACTTTTAGATGCAGCTCAGAACTTCCCGAGGGCCCTAACACCAAGTCAAGTGCTGGAGATTCCTCCAGTACTACAAAACTCACTCCCTGAGGCAAATTCTATCTCACATCAGATGACAAAGATTAATGGCCAGACCCATGTTCAGTTCTCTCATCCGCCCCAGCAGACAAAGCTTCAACAACAGCAACAACCTGGCATGCTGTCTGAGATATCTGGGCACGTGGGACTTCCCCCAACCCCTACAACCAACCAACTCTCTGCGGCTGGTAGTAGTATATTAACTGGTGCGGCTGGAGCAGGGCAATCTGTAATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCCACTAATAACTGTGCCAATGCACTTCCACATGTGAATTCCCGGATCCATAGGAACACAACAATAGGGGATGACATGGCTCAGTCTGCAGCCACGATCTTGAGTCCAAGTGCCTTAGAAACTATGTCATCAAATGCAAGCATGGTGAAAGATTTTCAGCCAAAGTCTGAAGTTAAGCCTTCTTTAAACATATCCAAAAGTCAAAATCAAGGGAATTTTGCCCCTCAAATGTACTTAAATGGTGGAGCTGCACTGACTGATTATTTGGATACGTCATCTTCTACAACTTCAGTTAGCCTTTCCCGGAATGACACTCATATACATCAGAATAACAACCCATTATCTTACAATCCACAGTCAATGTTGTTTAGAGACAATAGTCAAGATAGGGAGATTCAGGCAGATGTGAGGAGCACTGTTCCATATGGCAATAACATTGATGGTCACTTGGGAATGCCACTGAATCCAGATTCTCTTTTGCCCAAAGGCACAGTGGGACTGGGAAAGGATTTGTCCAATAACTTTTCTTCGGCAGGCATGCTTGGTAACTACGAAAATAATAGAGATGCTCAGCAGGAACTCTCATCTTCAATGGTTTCACAGACATTTGGGGTCCCTGATATTACCTTTAATTCAATTGATCCCACAATAAATGATAGTAGCTTCTTAAATAGGGGTACATGGGCCCCACCACCACCACCACCACCACCGCCACCACAATTTCAGAGGATGAGGACATATACCAAGGTATACAAACGTGGAGCTGTGGGTAGGTCCATAGACATAACCCGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTGGCTCGTAGATTTGGCATAGAGGGACAGCTGGAAGATCGGCAAAGGGTTGGCTGGAAACTTGTTTATGTAGATCATGAAAATGACGTTCTGTTAGTGGGGGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGCATTAAAATACTTTCACCTCAAGAGGTGCAACAGATGAGCTTAGATGGAGATTTTGGCAATGGCGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGATGGTGGAAATACTTAA 3420 0.4518 MPISQIHRRDKTMKTQAEGPGAGAASATAPPNPCEGAEKKSINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKSQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPSLDFCKQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDDPSDFDNLFKRTMPWLGDDMCMKDPQAVPGLSLVQWMNVQQNPALSSSLQPNYMQSLPGSVLQNLPGADIARQLGFCTTQISHSNNVGFNPQRLLQTPQQLEHLQNLGQKIPSASSPLGTVMQSQQSLGDITQQPRQNLASQTVPQSQVQTQLLHPHNLVQTNNILQQQQPSIQNHQLHRNVSQNLPQLQQQQTIIGQNQQQNLIQSPMPDHVNQQLQMSDNQIQLQLLQKLQQQQQTLLAQQSVLQQPTQLHQIQDQQRQLLDAAQNFPRALTPSQVLEIPPVLQNSLPEANSISHQMTKINGQTHVQFSHPPQQTKLQQQQQPGMLSEISGHVGLPPTPTTNQLSAAGSSILTGAAGAGQSVITDDIPSCSTSPSTNNCANALPHVNSRIHRNTTIGDDMAQSAATILSPSALETMSSNASMVKDFQPKSEVKPSLNISKSQNQGNFAPQMYLNGGAALTDYLDTSSSTTSVSLSRNDTHIHQNNNPLSYNPQSMLFRDNSQDREIQADVRSTVPYGNNIDGHLGMPLNPDSLLPKGTVGLGKDLSNNFSSAGMLGNYENNRDAQQELSSSMVSQTFGVPDITFNSIDPTINDSSFLNRGTWAPPPPPPPPPPQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0028 1139 MobiDBLite consensus disorder prediction 518 548 - -
Dere01g0028 1139 SUPERFAMILY DNA-binding pseudobarrel domain 138 278 IPR015300 -
Dere01g0028 1139 Pfam AUX/IAA family 1027 1112 IPR033389 -
Dere01g0028 1139 ProSiteProfiles PB1 domain profile. 1027 1111 IPR000270 GO:0005515
Dere01g0028 1139 Gene3D - 313 384 - -
Dere01g0028 1139 MobiDBLite consensus disorder prediction 1 39 - -
Dere01g0028 1139 FunFam Auxin response factor 1022 1116 - -
Dere01g0028 1139 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Dere01g0028 1139 Gene3D - 1022 1116 - -
Dere01g0028 1139 SMART B3_2 149 251 IPR003340 GO:0003677
Dere01g0028 1139 FunFam Auxin response factor 147 251 - -
Dere01g0028 1139 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere01g0028 1139 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Dere01g0028 1139 Gene3D - 147 250 IPR015300 -
Dere01g0028 1139 CDD B3_DNA 148 240 IPR003340 GO:0003677
Dere01g0028 1139 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 643 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere01g0028 1139 MobiDBLite consensus disorder prediction 1003 1022 - -
Dere01g0028 1139 FunFam Auxin response factor 313 384 - -
Dere01g0028 1139 SUPERFAMILY CAD & PB1 domains 1031 1105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0028 Dere-ChrDere01 3430167 3438182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0028 31 508 B3 DNA Binding Superfamily AT1G19220 71.102 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere01g0028 B3 2e-19 CL0405