Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0017 ATGGCACTCGGTGGTTCATGGTCGCCGGTCATCCTATTGCTTCTGGTTTACATTGTCCCCTCTTCCTGCGGGGCTTCCGTCTCGGAATCACTCCTCAAGTTCAAGGCCTCTCTGGAGAACAACAACGCATTGTCCTCTTGGAATCAATCGACCCCTCCTTGTTCTGGTGGCCATGCCAATTGGGTTGGTATTCTCTGCGCAGATGGCAGAGTTTGGGGCTTGAAACTAGAGAAAATGGGGCTCAAGGGGGTCATCGATGTAGAATCCCTCAGAGGCCTCCCAGATCTCCGAACCATAAGCTTGATGGGCAACGATTTTGACTCCACTTGGCCAGAACTCCACTACCTGGTTGCTCTCAAGACCCTATACCTTTCCAATAACAGGTTTTCAGGTGTGATTCCTGACGAAGCCTTCCGACGTATGGTGTGGCTCAAGAAAATTCATTTGTCACACAATCAGTTCAGTGGTCCTATTCCCACTTCCTTGTCGTTGTTGCCCAGACTTAAGGAGTTGAGGCTTGAGAACAACAAGTTCCATGGCCCCGTCCCAGACTTTTTTCAGCCTACCTTGACCTCATTCAACGTTGCTAACAATCAGTTGGAGGGTAAAATACCAGCCAGCCTCAGTAAGATGTCCGCCTCTTCTTTTTCTGGTAATGAAGGGCTATGTGGAGCACCACTGGAAGCATGCAAATCCCCCAACTCCAAGCAGGGCGCCTCGGTGGCGAGTATTGTGGTGGTAGCCATAGTTGTAGGAGTGGCAGTGATTGTGATAGTAGGAGTAATATTGGTGGTTCTTGGGAGAAAAAACAAAGCAAATGGGTCAGTGGAGAATCCTGCAACATTAGGGTCCAAAAAGAGAGCAGGAAGCAGGGATGTAGACGATGGGAGTCATCACTCAGTATCGTCACATGCCTCGTCCACCAGCTCCGCCAGAAGAAATGCAGATAACCTAAAGCTGTCGTTTGTTAGAGACGACAGAGAGAGGTTCGATTTGCAAGAATTGCTGAAAGCATCGGCAGAAGTATTGGGAAGTGGGTGCTTCAGTTCTTCCTACAAGGCTGCTTTATCCAATGGCTCAATGATTGTGGTGAAGAGATTCAAGCAAATGAACAACGTAGGAAGGGATGAGTTCCACGAGCACATGAGAAGGATCGGAAGGCTGTCGCATCCTAACTTGCTCCCTCTTGTGGCTTACTATTACCGCAAGGAGGAGAAGCTCTTGGTCACGGACTATGTCAAACATGGCAGTTTGGCGGTACGCCTGCATGGACACCAAGGGTTGGGGCAGCCATGCCTTGATTGGCCAGCGAGGTTGAAGATCGTGAAGGGCATAGCAAAAGGTCTGGAATATCTGTACAAGGAGATGCCAAGCCTGATAGCACCACACGGCCATCTGAAATCGTCGAACGTGCTTCTCGGGGAGTCCTACGAGCCGCTGCTGAATGACTACGGGTTGGTGCCGGTGATAAACCAGGAGCTTGCGCAGGACACCATGGTGATCTACAAGTCGCCCGAGTATCTCCAAAATGGGAGGGTCACCAAGAAGACTGATGTGTGGAGTCTGGGAATTCTCATTCTGGAGCTCCTAACTGGCAAGTTCCCTGCCAGCTTTCTGCAGCAAGGCAAAGGAAGTGAGATGGGTTTGGCCAATTGGGTGCATTCCGTAGTCCCAGAAGAGTGGAACAGTGAGGTGTTTGACAAAGAAATGGGTGACACCAGCGCCAGCCAAGGCCAGATGGCCAAGCTCTTGAAGATTGCTTTGGATTGTTGCGAGGGGGATGTCGACAAGAGATTGGATCTCAAGGAAGCCATTGAGAAAATTCAAGAGCTCAAAGACACCGACCATGATGACCAACAGGCTAGCTAG 1869 0.5024 MALGGSWSPVILLLLVYIVPSSCGASVSESLLKFKASLENNNALSSWNQSTPPCSGGHANWVGILCADGRVWGLKLEKMGLKGVIDVESLRGLPDLRTISLMGNDFDSTWPELHYLVALKTLYLSNNRFSGVIPDEAFRRMVWLKKIHLSHNQFSGPIPTSLSLLPRLKELRLENNKFHGPVPDFFQPTLTSFNVANNQLEGKIPASLSKMSASSFSGNEGLCGAPLEACKSPNSKQGASVASIVVVAIVVGVAVIVIVGVILVVLGRKNKANGSVENPATLGSKKRAGSRDVDDGSHHSVSSHASSTSSARRNADNLKLSFVRDDRERFDLQELLKASAEVLGSGCFSSSYKAALSNGSMIVVKRFKQMNNVGRDEFHEHMRRIGRLSHPNLLPLVAYYYRKEEKLLVTDYVKHGSLAVRLHGHQGLGQPCLDWPARLKIVKGIAKGLEYLYKEMPSLIAPHGHLKSSNVLLGESYEPLLNDYGLVPVINQELAQDTMVIYKSPEYLQNGRVTKKTDVWSLGILILELLTGKFPASFLQQGKGSEMGLANWVHSVVPEEWNSEVFDKEMGDTSASQGQMAKLLKIALDCCEGDVDKRLDLKEAIEKIQELKDTDHDDQQAS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0017 622 Gene3D Ribonuclease Inhibitor 119 234 IPR032675 -
Dere01g0017 622 FunFam pollen receptor-like kinase 1 306 412 - -
Dere01g0017 622 Gene3D Transferase(Phosphotransferase) domain 1 413 621 - -
Dere01g0017 622 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Dere01g0017 622 Pfam Protein kinase domain 341 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0017 622 Gene3D Ribonuclease Inhibitor 23 118 IPR032675 -
Dere01g0017 622 SUPERFAMILY L domain-like 24 227 - -
Dere01g0017 622 ProSiteProfiles Protein kinase domain profile. 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g0017 622 FunFam Pollen receptor-like kinase 1 413 622 - -
Dere01g0017 622 Gene3D Phosphorylase Kinase; domain 1 301 412 - -
Dere01g0017 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 616 IPR046959 -
Dere01g0017 622 SMART LRR_typ_2 116 140 IPR003591 -
Dere01g0017 622 SMART LRR_typ_2 165 188 IPR003591 -
Dere01g0017 622 MobiDBLite consensus disorder prediction 275 312 - -
Dere01g0017 622 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Dere01g0017 622 SUPERFAMILY Protein kinase-like (PK-like) 341 611 IPR011009 -
Dere01g0017 622 FunFam Nuclear pore complex protein NUP107 25 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0017 Dere-ChrDere01 3335673 3339060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0017 9 618 Receptor kinase-like Gene Family AT5G35390 53.566 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere01g0017 Pkinase 3e-29 CL0016