Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0003 ATGGCTGTTGGGAGGGCTGTGGATTTGACTCAGTTTGATGGATATAAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGACATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGCAGGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGATATTCCATGGAATGAGTTTTGTGGTGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTCTCGCCCAAAATATTGCTTTCCACTGGTGAAGCAGCTAAAACAAGCAAGCTGGATTCAGAAGCAGTAGTTAATAATGAGGGCAACAATAGCAGAGACAGGGAAGACGCCCTCACCACGGTTCTACCACGAAAAGATGGTCTTGGTTTGCTTTGCATGGTGAACAGGGCAAATTGA 411 0.438 MAVGRAVDLTQFDGYKDLLKKLEQMFDIKGELCGSSKTWQVVYTDNEDDVMMVGDIPWNEFCGVVRKIFIYTAEEVKKLSPKILLSTGEAAKTSKLDSEAVVNNEGNNSRDREDALTTVLPRKDGLGLLCMVNRAN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0003 136 Gene3D - 2 80 - -
Dere01g0003 136 SUPERFAMILY CAD & PB1 domains 5 68 - -
Dere01g0003 136 Pfam AUX/IAA family 36 81 IPR033389 -
Dere01g0003 136 ProSiteProfiles PB1 domain profile. 1 84 IPR000270 GO:0005515
Dere01g0003 136 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 80 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0003 Dere-ChrDere01 3066091 3068725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0003 2 109 B3 DNA Binding Superfamily AT1G59750 67.593 1.37e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g0003 AUX_IAA 8.4e-09 CL0072