Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03048 ATGGCATTTACTACTTCAAATCACAAATCTGGCGGAATTCATGCAGGGGCAACCAATGATGATTTATGCAAGGAATTGTGGCATGCCAGTGCTGGTCCCCTTGTCACTCTTCCACGTGAAGGGGAGCGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTTGTGGCATCTATGTATGAGGGATTAGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCCAAAATATTGTGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACCAGCCCAGATGATCCTCTGCCTGAATCTCCGAGGGTCAAGGTCCATTCGTTTTGCAAGACACTTACTGCTTCTGACACCAGTACCCATGGAGGTTTCTCTGTTCTTCGTAGACATGCAGACGATTGTCTGCCTCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGAATGAATGGCATTTTAGACATATTTTTCGAGggcaacctaggcgccacttgcttaccaccgggtggagtgtctttgtcagctccaaaaaattagtggctggtgatgcctttatattcttaaggggtgaaaatggagagctgcgagttggggttaggaggctcatgagacaacaaagcaatgtgccttcttcagttatatctagtcACAGCATGCATCTTGGTGTTCTGGCTACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGCTCAGAGTTTATTGTGAGTGTCAACAAGTATCTAGAAGCTCAGAGTCATAAGCTCTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAATTCCTGAAAGAAGGTTCAGTGGCACAATAGTGGGTGTTGGAGATAATAAATCAACAGTCTGGCCTGATTCTGACTGGCGATCATTAAAGGTGCAATGGGATGAACCGTCATCAATTTTGCGTCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACTTTTGTCTACCACTCCTGCAAACCCACAGCCAACTCAAAGAAACAAGAGGGCACGACCTCTAATTCTACCTTCTTCAATGGCTGATTCTTCTATGCAAGGCGTATGGAAATCACCAATAATGGAATCTACATCTTTCTCTTATTGTGACCCCCAACTTGGACGTGGCCTCTATCCATCACCCAAGTTCAATTCTACTGCAACTAACTTTCTTGGTTTTAGTGGGAATAGCTCTGTGGGACATCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTCCATGGAATCTATTTCAGCTATAGCCCTCAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGTTGTAGACTCTTCGGGATTCAAATACATGAGAATTCTAATGCAGAAGGAAGTCTACAACCAGTCACTTTAGATGCCGAGTCTGATCAGAATTCTGAACCATCAAATGCCAATCGATCTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAATCATCCCTGCAGTCTCCCCAGGAGTCACAAAGCAAGCAAATAAGGAGCTGTACCAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTGATGGATATGAGGATCTGCTCAGGAAATTGGAAGAGATGTTTGACATCAAGGCTGAGCTTTGTGGGTCCCAAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGACATGATGATGGTTGGAGATGATCCATGGAATGAGTTCTGTACTGTTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTGAAGAAGCTTTCGCCCAAAATAGGACTTCCGATCAATGAAAAAGATAAGCCAAGCAAGCTGGATTCTGAAGCAATCGTCAATCCTGAGGACCAGTCGTCTATTGTGGGACCCAGTTGCTAG 1995 0.4005 MAFTTSNHKSGGIHAGATNDDLCKELWHASAGPLVTLPREGERVYYFPQGHMEQLVASMYEGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRVKVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSTVWPDSDWRSLKVQWDEPSSILRPDRVSSWELEPLLSTTPANPQPTQRNKRARPLILPSSMADSSMQGVWKSPIMESTSFSYCDPQLGRGLYPSPKFNSTATNFLGFSGNSSVGHPSNKSIYWSNRMENSMESISAIALKEAGEKRQGTGNGCRLFGIQIHENSNAEGSLQPVTLDAESDQNSEPSNANRSDIPSVSCDAEKSSLQSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKAELCGSQKKWQVVYTDNEDDMMMVGDDPWNEFCTVVRKIFIYTAEEVKKLSPKIGLPINEKDKPSKLDSEAIVNPEDQSSIVGPSC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03048 664 Gene3D - 290 363 - -
Cca11g03048 664 SMART B3_2 127 229 IPR003340 GO:0003677
Cca11g03048 664 SUPERFAMILY DNA-binding pseudobarrel domain 123 256 IPR015300 -
Cca11g03048 664 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca11g03048 664 Gene3D - 124 229 IPR015300 -
Cca11g03048 664 SUPERFAMILY CAD & PB1 domains 542 617 - -
Cca11g03048 664 MobiDBLite consensus disorder prediction 637 664 - -
Cca11g03048 664 PANTHER AUXIN RESPONSE FACTOR 1 19 626 - -
Cca11g03048 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Cca11g03048 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 626 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca11g03048 664 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Cca11g03048 664 MobiDBLite consensus disorder prediction 650 664 - -
Cca11g03048 664 MobiDBLite consensus disorder prediction 499 539 - -
Cca11g03048 664 CDD B3_DNA 125 227 IPR003340 GO:0003677
Cca11g03048 664 Pfam AUX/IAA family 585 630 IPR033389 -
Cca11g03048 664 Pfam AUX/IAA family 530 584 IPR033389 -
Cca11g03048 664 Gene3D - 535 629 - -
Cca11g03048 664 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03048 Cca-Chr11 57683940 57693531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03048 3 658 B3 DNA Binding Superfamily AT1G59750 69.300 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca11g03048 B3 7.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03048 K14486 - gmx:100815450 1211.44