Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03042 ATGGAACTCTCGAGTCAAGAAGGAGAAATCCCAATCCCAATCCCAATAAGCAGCACTACATATGGTGGGGGACATGGTAATGGACATGGTCATGGACTCATGATTCACCATGACCCTCCACACCACAACCACATTATATCCTCCACAGCACCTTCAAATGGCACACCTACTATGCAGGAGGATCATGTGTACAAGAAAGTGGTGAGATACAGAGAATGCCTGAAGAACCATGCAGCTTCCATGGGGGGGAATGCCACTGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAGGGCACCATAGAGGCTCTCAACTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGAGAGCCCTCTTCATGTGACTTCCACCCCTTCAGCATGAGTGGAAGGAGGCTCATTCTAGGCCCTCACAAGAACCTTCTCCCTCCTGAGGCTCTAGGGTACCCTACAGGTAACATCCTCCCTTCCAGAAGTGTGCCACCTCACCAGATGATAATGCCCTACAACATAGGACACCTGCCCTCAGAGTCTGACGAGCAAGAAGAGGGCGGTGGAGGAATGGTGCAGGCTAGACCATCCTCCCAGATGGTGAAGAAAAGGTTCAGGACAAAGTTCAGCCAGGAGCAGAAGGACAAAATGCTAAACTTTGCTGAGAAGGTGGGGTGGAAAATCCAGAAGCAAGAGGAGTCTGTGGTGCAACAGTTCTGCcaagagattggggttaagagaagagtgctcaaggtttggatgcacaacaataagcacaatcttgccaaaaaGAATCCCCCAACTGCGCCACCACCTTAA 828 0.4698 MELSSQEGEIPIPIPISSTTYGGGHGNGHGHGLMIHHDPPHHNHIISSTAPSNGTPTMQEDHVYKKVVRYRECLKNHAASMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDFHPFSMSGRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYNIGHLPSESDEQEEGGGGMVQARPSSQMVKKRFRTKFSQEQKDKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAPPP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03042 275 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Cca11g03042 275 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 70 119 IPR006456 -
Cca11g03042 275 Pfam ZF-HD protein dimerisation region 68 120 IPR006456 -
Cca11g03042 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4-LIKE 38 269 - -
Cca11g03042 275 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g03042 275 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 205 261 IPR006455 -
Cca11g03042 275 SUPERFAMILY Homeodomain-like 194 266 IPR009057 -
Cca11g03042 275 MobiDBLite consensus disorder prediction 182 204 - -
Cca11g03042 275 Gene3D - 192 267 - -
Cca11g03042 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03042 Cca-Chr11 57594554 57596762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03042 1 268 ZF-HD Transcription Factor Family AT1G14440 48.515 6.32e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca11g03042 ZF-HD_dimer 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03042 - - gmx:100805652 428.713