Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03039 ATGTCGGAAATGCGGGTTTCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTTCTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCACTCAGTTCCTCAAGATCCGTCGCTGCATGGAACAAGGACACTGGAAGCAGAAGGTTCACCAACAACGCCAATGACAAAGAGAAGGAGAAGAGGGTCTTCTTGTACAATTGGAAGAACTATAAATCTTCCAGCGAGAAACACAACgaggaagaagaagaagaagaagatgatgatgatgatgatgacggtgatgGGGGTGGATCTTCTTCGCTTCTTGGAGATAGAGACAGAGACAGTTTAAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTTCTTGGCGGTTGGTGGAAGTGGAACTCGTTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCAGAAGAACAGTCCCCGATAAGAAAAAGAGTAAGAAAAGTAACCCTCATTTTGATTTTTTAGCAAAGTATCAGCACCGTAGAGAAACCAATCCAGGGAGAAATTTTGTGAGTTCTTCCAAGGCATTGCTAGAGGGGTCTTTTTTCAGCAGGGATGACTCGGTTGAACATGAACACTCTGATGATGACACTAATTCTGAGGGTGTGAGGCCAATTTCAGGGACTTCTCCTTTGCTTCTCAAGCTTAGGCGGAAGAATTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGTCGAAAAGAGGACTCTTCTTATTCCTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTATGGTCGCCGTTATCCCAGCACTCTTGGATCCTGGGATGGCACCACCACTTCGGTGAATGATGGCGACTGCGACGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAGAGGGATGTGTGGGAGTTGTTATTCCCCCTCACTCTCCGACACTTTAAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCGAGACACCGGAGATCTGTTTCGGCCTCGCACAAGAGGAGACTTTCTTTGAGAAGTGCTCGAGGTGTTATTCCATTGCTTACTAATAGTGGTGATGTTAGAGAAGGGTCGTCTGTGGGAACTGGTAGGAGTGATGATGAACTTTCCACGAACTTTGGGGAGCTTGATCTCGAGGGCTTGAGCCGATTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTCGCTTTCAATGGGGAAGGGGAAGATGAAGGCACGCCAGAAAATAGTAGGAGTTTCAGCCAGAAGTATAGGCCTATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCCGTTTCGAGGGGACGGGTTGCTCCTGTCTATCTTTTTCAGGGACCCCGTGGGACTGGCAAAACATCAACTGCTAGGATATTTGCAGCTGCCTTGAATTGTGCAAGTCCTGATGAGAGTAAGCCTTGTGGCTACTGCAGGGAATGTGCTGATTTCTTTTCTGGTAAGAGCAGTGATCTACTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAAGCTAGATATCTACTGAAAAGATTGTCAATGGGGTCATCATCAGTCTCCTCGCAATATACAGTTTTTGTTATTGATGAGTGTCACTTGTTGCCCTCCAAGACATGGCTGGGATTTCTAAAGTTTCTGGAAGAACCACCTCAGCGAGTTGTATTCATATTTATAACATCGGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATCAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATGTCTACCCAGGAGAACCTTGATGTTGAAACAGATGCACTGGAACTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAAAGAATTACCACTTCTCTTGTAAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCATCTGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGATTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGCCTTATTATGGACATCATCGCTGGATCATATGCTGTCATTGACACCAAACCTGATGATGATTCATTCTTAGGTGGACGTAGTTTGAATGAATCGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCCGAAAAACAGTTGAGGACATCCAGTGAACGCTCTACATGGTTCACAGCTACTCTATTGCAGCTTGGTTCTACACCTTCTCCAGATCTTACTCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGATGTTACCTCTAATACGCACAAGTCAGACTCTCAATATGTGCCTCGAAAGTCAACATTCAATGCATCCCAGCAAAAAGCAGTAAATGATAATTCCCACCATCAAAAGGATATATCCTCTAAGACTGGTGGTGTCAGCTTGAAATCAAAGCCATCAAACAGCCCGATCTTAGATGATGGCTCTACAGTGGTCTCATCTGATGATTTTATGGTTGGGAATACAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATCGGGAAGTGTCACTCTAAGACATTGAAGCAGCTGCTACACATTCATGGAAAGCTTGTGTCAGTATGCGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGATGCAGATATTAAAGTTAGGGCTGAGAGGTTTTTAAGAAGCATTACAGACTCGATGGAAAAGGTTCTTAGGCGCAATGTGGAAGTCAGAATAATCCACTTGCCAGATGGTGAAGGTGAAATTCAGGTTAATCTACTGGGTCTAAAGCAGGCAGAGTCAGCAATGGCTAGTGAGAAGGAACAGAGACAAGGTCATATGAATGGAACGGAGTCTTATTCTAGTTTGCCTCCTTTACTGGATGGAAACCTTCAATCTACCACTGCTTCATCAGATATTCTGGCTGAAGGAAATGGTGTGAGAGAGAGGAGACAAGATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCTGTAGAAAAGGGTTCCCCTGGATCATTGAGTCGTTTGAGACCGGAGAAGAATCAAGTACTGCCACAGAATGGTGTGGACTCAATAGAATCCATGGATTCAACAAGATTTTGCTCTCACCAGCATTGGGAAGAAGACTCAAATAATGAAGTTAAAGTTTTGAGCCTTATAAATGGAAGGGTTCCACAGAAGGATCAGATTGGTAGAAAAGCTGATCGATATCCCATGTCTCCAAGTTTATTGCATGACAACAGTTTAGCATCAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCGGGAGCTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTAATAAAGgtaaAAGGTGGCACCCCGGTTAGAGCGCGTAGAGTTGGAAGTTTTACATTGTTTCGTGACTGCGGTAAGCAAAAAAGGGAGCGGAGAAGATAA 3717 0.4331 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKDTGSRRFTNNANDKEKEKRVFLYNWKNYKSSSEKHNEEEEEEEDDDDDDDGDGGGSSSLLGDRDRDSLSDARNGCDSKSDTFLAVGGSGTRSSIFRCGDANLVSRRTVPDKKKSKKSNPHFDFLAKYQHRRETNPGRNFVSSSKALLEGSFFSRDDSVEHEHSDDDTNSEGVRPISGTSPLLLKLRRKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGRRYPSTLGSWDGTTTSVNDGDCDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVAFNGEGEDEGTPENSRSFSQKYRPMFFGELIGQNIVVQSLINAVSRGRVAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECADFFSGKSSDLLEVDGTNKRGIDKARYLLKRLSMGSSSVSSQYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKMSTQENLDVETDALELIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDDSFLGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSNTHKSDSQYVPRKSTFNASQQKAVNDNSHHQKDISSKTGGVSLKSKPSNSPILDDGSTVVSSDDFMVGNTMFRCIDSGKLCDIWVHCIGKCHSKTLKQLLHIHGKLVSVCEVEGVLVAYVAFGDADIKVRAERFLRSITDSMEKVLRRNVEVRIIHLPDGEGEIQVNLLGLKQAESAMASEKEQRQGHMNGTESYSSLPPLLDGNLQSTTASSDILAEGNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDSIESMDSTRFCSHQHWEEDSNNEVKVLSLINGRVPQKDQIGRKADRYPMSPSLLHDNSLASISGKDNLGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRARRVGSFTLFRDCGKQKRERRR 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03039 1238 CDD AAA 467 625 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 872 893 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 206 227 - -
Cca11g03039 1238 Gene3D - 445 626 IPR027417 -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 86 102 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 23 62 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 80 122 - -
Cca11g03039 1238 CDD HLD_clamp_pol_III_gamma_tau 628 691 IPR045085 -
Cca11g03039 1238 Gene3D - 630 691 - -
Cca11g03039 1238 SMART AAA_5 485 635 IPR003593 -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 383 403 - -
Cca11g03039 1238 Coils Coil 762 792 - -
Cca11g03039 1238 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 188 1178 - -
Cca11g03039 1238 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 453 803 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Cca11g03039 1238 MobiDBLite consensus disorder prediction 806 820 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 831 863 - -
Cca11g03039 1238 PANTHER PROTEIN STICHEL-LIKE 1 188 1178 - -
Cca11g03039 1238 SUPERFAMILY post-AAA+ oligomerization domain-like 699 801 IPR008921 GO:0003677|GO:0006260
Cca11g03039 1238 MobiDBLite consensus disorder prediction 806 893 - -
Cca11g03039 1238 Pfam DNA polymerase III, delta subunit 468 628 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 386 403 - -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 29 55 - -
Cca11g03039 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 675 IPR027417 -
Cca11g03039 1238 MobiDBLite consensus disorder prediction 1015 1040 - -
Cca11g03039 1238 Pfam DNA polymerase III subunits gamma and tau domain III 682 804 IPR022754 GO:0003887
Cca11g03039 1238 Gene3D - 692 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03039 Cca-Chr11 57551769 57558700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03039 449 743 Core DNA Replication Machinery Family AT1G21690 24.671 1.11e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03039 - - gmx:100814391 2123.21