Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03034 ATGGCAATTGCAGCGCCAAACTCATCACCCACCATGAGTCTCAGCCATAGCCAGAGCCAAGAGGAGGGcaccaccaccaccacctccaccaccaacgacaacaataacaacaacaataacaacaacaacaacatcaacaaACCCGATGATCACGACCACGACATGGTCATGCCCGGTTTCCGCTTCCACCCCACTGAAGAAGAGCTGGTCGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCCGCCTTGGCAGCTATTGGTGAGAAGGAATGGTATTTTTATGTGCCGAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTCACTACCTCTGGTTATTGGAAGGCAACAGGAGCTGACAGGATGATCCGAACCGAGAATTTTCGCTCCATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATCCGAACCAGTTGGATTATGAACGAGTATCGCCTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCTCTTTGCCGTGTGTACAAGAGAGCTGGAGTCGAGGAccatccctccctccctcgctgtctcccAACACGTCCATCCTCATCATCAAGAGCTTCTTCAAATTCTGACAATAATAAGAAGCACAACGAAATGCTTCACCACAATAACATGGGATTTGTGGCACAAGCAAAGCCAAACGATCACATAGTTGAAAAAATGAACGAAACCGAAGCAAGCAGTGATGTCAACACAGCTCTTGGACTTTCCAAATACAATGCTTACCGTGCTGCAATGGGTGCACTCACCACCACAATGGGTCTTCCAGTTGTTCCGCTGGACGACGAAGGGTTGATGATGATGCAACATCAGCAACAATCTAAGCAACCAACCCATGCAACTGCCCCTGCTTGTGGAACAATCTTCTCTGCTGGGCCTTCTAATTCCAATAATAGTGTTGTCAATATGGATGAACTGAACAGGCTAATGAGTTATCAACAACAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCAACTTTGCTGATGCAACCATCACCAGTAGTGTCTCTCAACTCACTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCTGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1245 0.4329 MAIAAPNSSPTMSLSHSQSQEEGTTTTTSTTNDNNNNNNNNNNNINKPDDHDHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSSRASSNSDNNKKHNEMLHHNNMGFVAQAKPNDHIVEKMNETEASSDVNTALGLSKYNAYRAAMGALTTTMGLPVVPLDDEGLMMMQHQQQSKQPTHATAPACGTIFSAGPSNSNNSVVNMDELNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLNSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03034 414 SUPERFAMILY NAC domain 56 202 IPR036093 GO:0003677|GO:0006355
Cca11g03034 414 Gene3D NAC domain 65 206 IPR036093 GO:0003677|GO:0006355
Cca11g03034 414 MobiDBLite consensus disorder prediction 1 57 - -
Cca11g03034 414 MobiDBLite consensus disorder prediction 216 230 - -
Cca11g03034 414 Pfam No apical meristem (NAM) protein 58 182 IPR003441 GO:0003677|GO:0006355
Cca11g03034 414 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 30 409 - -
Cca11g03034 414 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 30 409 - -
Cca11g03034 414 MobiDBLite consensus disorder prediction 209 238 - -
Cca11g03034 414 ProSiteProfiles NAC domain profile. 56 203 IPR003441 GO:0003677|GO:0006355
Cca11g03034 414 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03034 Cca-Chr11 57504901 57507011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03034 24 227 NAC Transcription Factor Family AT2G02450 74.661 4.46e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g03034 NAM 4.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03034 - - gmx:100792622 668.307