Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03031 ATGGGTGAAAGAATATTAGTAGTTCTATTGCTTGTTTTGAATTATTTGTTGGTTGCAGAAGGAGAACAAGCTGATGGAGATTTGACCAGCCTTTTGTCTCTTATGGATACCTTGAAGAATACCCCTCCTAATTGGGTGGGTTCGGATCCTTGTGATAGTTGGGATGGAATCAATTGCAAGAATTCACGTGTTACATCAATAACATTATCAAGCACTGGTTTGGTTGGTCAACTTTCTGGAGATCTTGGTTCGCTATCTGAATTGGAGACTTTGGATCTATCTTACAACAAGGACTTGACTGGACCGCTTCCACAATCCATTGGGGATTTGAAGAAGCTGACAACCTTAATTCTTGTTGGTTGTAGCTTCAAGGGTCCTATTCCAGACAGCATAGGAAATCTGCAGGAGCTCCTCTTCTTATCTTTAAATTCCAATAGCTTTAGTGGACCAATTCCGCATTCAATTGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCTGACAATCAACTTCAAGGGAACATCCCGGTATCTAGTGGCGATATATCTGGTTCTGGTCTTGATAAGTTACACCATGCCAAGCATTTTCATCTTGGGAAGAATAGTCTCTCAGGCAGTATTCCTCCTCAACTTTTTAGCTCGGAAATGGCTCTGATTCATGTGCTTTTGGAAAGCAATCAACTCACTGGAAACATTCCAACTACGCTTGGACTAGTTCAGAGTCTGGAGGTGGTGCGCTTAGATAGTAATTCATTAAGTGGAACTGTGCCTCAAAACATCAACAACCTTACGAATATTCAAGATCTGTTCTTGTCCAACAATAAACTGTCAGGCTCCTTGCCAAACCTTACTGGAATGAATGCCCTCTGCAACCTGGACATGAGCAACAATAGTTTTAAACCATTGGATTTTCCAGGATGGTTTTCGACTCTTAAGTCCTTAACAACATTAAAGATGGAGAATACACAACTTCAAGGACAGGTTCCTACTTCTTTGTTTAGGATTATCAATTTACAGACTGTGGTGCTAAAAGACAACAAAATAAATGGAACCTTGGATATCGGCTCCTCCTACAGCAACCATCTGCGACTTGTTGATTTGGAGACAAATTCAATTGACAGTTTTCAGCAAAATGATGTTCCAAATGTCAAGATAATACTTAAAGATAACCCACTTTGCCAAGAAAATGGAGGTGTAGAAAGCTACTGCTCCTCTTATCAACCCACTGTTTCATATTCAACACCATTAAATCACTGTCAGCCTGCTACATGCAGTTCAGAACGGATATCTAGTCCCAACTGTATATGCGCATATCCATATACAGGAACCTTAGCTTTCAGGTCACCTTCCTTTTCGGACTTGGATAACAAAACTTACTACTCCATGCTTGAGGAGGGTCTTATGCAGTCCTTTAAGTCTCATTTTCTACCTGTTGATTCGGTTTCGCTGAGCCAACCAATTCAGGATTCAACTAAGTATCTCAAAATGAACTTACAAGTCTTCCCTTCAGGACAAGATCATTTCAATCGAACAGGGACTTTGAGCATTGGTTTTCTGCTAAGTAACCAGACTTTTAAGCCTCCTAAAGGTTTTGGACCATTTTATTTTCTGGCAGATAAATATGAATACTTTGGGAGCTCTGGATTGACTGAATCAAGTAAATCTTCAAACATTGGAATCATAATTGGAGCGGCAGTTGGTGGTTTGGTCCTGCTACTGTTATTACTCCTATCAGGTCTTTATGCTTTCCGCCAAAAGAAAAGGGCCGAAAAAGCTATTGATCAAAGCAATCCTTTTAGACGCTGGGATACCGTTGAGAGCAAAAGTGAGACCCCTCAGTTGAAAGAAGCAAGGATGTTTTCTTTTGAAGAGCTTAAAAGATACACCAAAAATTTTTCTCAAGACAATGATATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAACCCTTCCCAATGGGAAACTGATAGCTATAAAACGAGCTCAAAAAGAATCTATGCAGGGAAAGATTGAATTTAAAGCAGAGATTGAGCTCCTATCAAGGGTCCACCATAAGAATCTTGTTAGCCTTTTGGGATTCTGCTTTGCGCGAGGAGAACAAATGCTGGTTTATGAGTATGTTCAAAATGGAAGTTTAAAGGACGCTCTCTTAGGGAAATCAGGAATCGAAttagattggattagaaggctaaaaattgcccttggcactgcccggggtttggcttatcttcacgaacttgttaatcctcccatcatacacagggacatcaaatcaaacaatattttgctggatgatcgcctaaatgctaaagttgctgattttggTCTCTCCAAGTCTATGGTTGATAGTGAAAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCCGCAAAAAGGCCATTGGCACGAGGGAAGTATATTGTGAAAGAGGTTAGGAATGCACTTGATAAGACAAAAGAGTTATATGGTTTGCATGAATTTGTGGATCCAGCTATTGGTTTAACGTCCACACTGATTGGTTTTGACAAGTTTGTGGATATGAGCATGAAATGTGTTGAAGACTCAGGTAGTGACAGGCCTAAAATGAGTATTGTGGTGACAGAAATCGAGAACATTTTGAAGTCAGGTGGTACAAACCCCATTGATGAATCACCATCCATCTCTTCTGGTTTTGAAGAGGTAAGTAGAGGGAGTTCTAGCCATCCTTATAATAGCAACGACACCTTTGATTTAAGTGCAGGATTGCCATATCCAAAAGTTGACCCTATGTAA 2868 0.3773 MGERILVVLLLVLNYLLVAEGEQADGDLTSLLSLMDTLKNTPPNWVGSDPCDSWDGINCKNSRVTSITLSSTGLVGQLSGDLGSLSELETLDLSYNKDLTGPLPQSIGDLKKLTTLILVGCSFKGPIPDSIGNLQELLFLSLNSNSFSGPIPHSIGNLSKLYWLDLADNQLQGNIPVSSGDISGSGLDKLHHAKHFHLGKNSLSGSIPPQLFSSEMALIHVLLESNQLTGNIPTTLGLVQSLEVVRLDSNSLSGTVPQNINNLTNIQDLFLSNNKLSGSLPNLTGMNALCNLDMSNNSFKPLDFPGWFSTLKSLTTLKMENTQLQGQVPTSLFRIINLQTVVLKDNKINGTLDIGSSYSNHLRLVDLETNSIDSFQQNDVPNVKIILKDNPLCQENGGVESYCSSYQPTVSYSTPLNHCQPATCSSERISSPNCICAYPYTGTLAFRSPSFSDLDNKTYYSMLEEGLMQSFKSHFLPVDSVSLSQPIQDSTKYLKMNLQVFPSGQDHFNRTGTLSIGFLLSNQTFKPPKGFGPFYFLADKYEYFGSSGLTESSKSSNIGIIIGAAVGGLVLLLLLLLSGLYAFRQKKRAEKAIDQSNPFRRWDTVESKSETPQLKEARMFSFEELKRYTKNFSQDNDIGSGGFGKVYKGTLPNGKLIAIKRAQKESMQGKIEFKAEIELLSRVHHKNLVSLLGFCFARGEQMLVYEYVQNGSLKDALLGKSGIELDWIRRLKIALGTARGLAYLHELVNPPIIHRDIKSNNILLDDRLNAKVADFGLSKSMVDSEKDHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISAKRPLARGKYIVKEVRNALDKTKELYGLHEFVDPAIGLTSTLIGFDKFVDMSMKCVEDSGSDRPKMSIVVTEIENILKSGGTNPIDESPSISSGFEEVSRGSSSHPYNSNDTFDLSAGLPYPKVDPM 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03031 955 Gene3D Transferase(Phosphotransferase) domain 1 708 916 - -
Cca11g03031 955 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Cca11g03031 955 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 939 - -
Cca11g03031 955 ProSitePatterns Protein kinases ATP-binding region signature. 638 660 IPR017441 GO:0005524
Cca11g03031 955 SMART serkin_6 632 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g03031 955 SUPERFAMILY Protein kinase-like (PK-like) 618 925 IPR011009 -
Cca11g03031 955 MobiDBLite consensus disorder prediction 907 940 - -
Cca11g03031 955 Gene3D Ribonuclease Inhibitor 181 395 IPR032675 -
Cca11g03031 955 Pfam Protein tyrosine and serine/threonine kinase 634 850 IPR001245 GO:0004672|GO:0006468
Cca11g03031 955 ProSiteProfiles Protein kinase domain profile. 632 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g03031 955 ProSiteProfiles Leucine-rich repeat profile. 265 287 IPR001611 GO:0005515
Cca11g03031 955 CDD STKc_IRAK 638 904 - -
Cca11g03031 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Cca11g03031 955 SUPERFAMILY L domain-like 58 380 - -
Cca11g03031 955 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 939 - -
Cca11g03031 955 Gene3D Phosphorylase Kinase; domain 1 602 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03031 Cca-Chr11 57460037 57466360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03031 1 954 Receptor kinase-like Gene Family AT5G49760 55.162 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca11g03031 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03031 - - gmx:100811702 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g03031 11 57460037 57466360 Cca08g01933 08 52047413 52054394 PCT