Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03027 TTATCTTGGTGGATTCATGTACCTCATGTACAGACTACCTTTTGTTGAGTGTCTAATGTTTGGTGCACTTATATCTGCAACTGATCCTGTTACCGTTTTGTCCATATTTCAGGAGCTTGGTACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAACGATGCAGTAAGTTTCTATTTGACAATGTCAGTGGTTAAAACTCATCCATCCGGACAAAATTTCTTCATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCAATGTCTGCTGGTTGGTTTTATAAATTTTACCTAATTCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCGTATTTCTCGTACATGCTTGCAGAAGGTCTTGGACTGTCTGGTATTGTATCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCGCGTAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCGGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGGGCAGCCAATGTGTTCTCTTGTGCTTATCTAGTCAACTTGTTCAGACCTGCTCGTCGACAAATACCTCCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAATTCATGAGCTTCCAGAAGGACATGGACAGACCATCTTAACTGCAACTACAGCAATTGTTGTTTTGACGGTATTACTCATTGGTGGTTCAACAGGCACAATGCTGGAAGCTTTAGAAGTTATAGGTACTGACAGTCACATTAACGAGAGTCCTTTGGCTTCAATTAGTTCCAGAATGAATTTTGAGGAGAACAATGGTTATATGTCTCCTGATGATGATGAATCGTCATCAAACAAAATCAAGATGAAGCTACACGAATTCCAAAGGAGTAGCGCTGCATCTTTTACAGCATTAGATAAAAACTACCTCACCCCATTCTTTACTAGTCAAAATGGAGATGAAGAAGATGAAATTAAGCTTCTAACATCCGGAAACGAGGAATTGGAAGACCTCGACAATGATAATGACCACTATTTGTCATGA 1174 0.3876 YLGGFMYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAVSFYLTMSVVKTHPSGQNFFMVVVRFLETFVGSMSAGWFYKFYLILQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYTYSNLSRSSQRFVSAFFELISSLAETFVFIYMGFDIAMEKHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLFRPARRQIPPKHQKALWYSGLRGAMAFALALQSIHELPEGHGQTILTATTAIVVLTVLLIGGSTGTMLEALEVIGTDSHINESPLASISSRMNFEENNGYMSPDDDESSSNKIKMKLHEFQRSSAASFTALDKNYLTPFFTSQNGDEEDEIKLLTSGNEELEDLDNDNDHYLS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03027 390 Gene3D - 14 65 - -
Cca11g03027 390 PANTHER SODIUM/HYDROGEN EXCHANGER 1 367 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cca11g03027 390 PANTHER SODIUM/HYDROGEN EXCHANGER 6 1 367 - -
Cca11g03027 390 Pfam Sodium/hydrogen exchanger family 2 286 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03027 Cca-Chr11 57416594 57429976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03027 18 288 Antiporters AT3G05030 33.333 4.26e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03027 K14724 - gmx:100810105 599.356