Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03010 ATGAAACGCGCAAACGACGACGTCGCGGGGAAGCCAGTCTTCCTAACCAAAGCCCAACGCGAGCAATTGGCCCTCCAGCGCCGCCAGGAACAAGTCGCCCACCAGAGGCACCGCCAGGAGCAGCTCCTCTCCCGCGACCGCCCCTCCGATCCCAAACCCTCCTCGGAAAGGGACAGAGACAGGgaccgcgacagggaccgcgaccgtgaccgcgaccgcgaccgcgaccgcgacAGAGACCGAGAGAGAGCACGCGATAgggagcgcgaggcggagcgtcgcaaccgagagagggagcgcgaggaggagagcaaggcccgggagcgagcgaggatcgagaagctggctgagcgggagcgcgagaaggagctggaATCGATAAAGGAGCAGTACCTCGGGTCGAAGAAGCCGAAGAAGCGCGTCATCAAGCCGAGCGAGAAGTTCCGCTTCTCCTTCGACTGGGAGAACACCGAGGACACCTCTCGCGACATGAACTCCCTCTACCAGAACCCTCACGAGGCGCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAAATCCGCCGCAAGGACGGCCTCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGACCTCTACGACACCTTCGACATGCGCGTCGACCGCCACTGGAGCGAGAAGAAGCTCGACGAGATGACGGAGCGCGATTGGCGCATCTTCCGCGAGGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGAAGCTGGATCGAGAGCAAGCTGAGCCACGAGCTTTTGAAGGCCGTTGAGAAGGCTGGTTACAAAACCCCTTCTCCTATTCAGATGGCCGCCATTCCCCTTGGTTTACAGCAGCGTGATGTCATTGGCATCGCCGAGACCGGTTCCGGTAAAACCGCCGCCTTTGTCCTTCCCATGTTGAGTTACATCACCCGTCTTCCTCCCATGAGTGAGGACAACGAGGCTGAGGGTCCCTATGCCGTTGTCATGGCCCCCACTCGCGAGCTCGCTCAGCAGATCGAGGACGAGACTGTTAAGTTTGCTCAGTATTTGGGCATCAAGGTCGTGTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTCGGCAGGGCTGTGAGATTGTCATCGCCACTCCCGGACGCTTGATCGACTGCTTGGAGCGTCGATACGCCGTTCTCAACCAGTGTAATTATGTGGTTCTTGATGAGGCTGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTATCGGACCACCTATATGTTTAGTGCTACAATGCCGCCTGCCGTCGAGAGGCTTGCTAGGAAGTACTTGAGGAACCCTGTTGTGGTGACCATTGGCACTGCTGGGAAGGCTACTGACTTGATCAGTCAACATGTGATTATGATGAAGGAGTCTGAGAAATTTTACAAGCTCCAGAGGTTGCTTGATGAGCTTAACGACAAGACCGCCATTGTGTTTGTTAACACCAAGAAGAATGCGGATATGGTTGCCAAGAACTTGGATAAGGAAGGGTATCGCGTGACTACTTTGCATGGAGGCAAGTCCCAGGAGCAGAGGGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCAACTGATGTTGCCGGACGTGGTATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACGCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACTTTCCTGACTCTTCAGGACACTGATGTCTTCTATGACCTCAAGCAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAACTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGATCTATTCCGGACAGACCACCGAGACGAAATGACACTGTTTTTGCGCATTAG 2094 0.4995 MKRANDDVAGKPVFLTKAQREQLALQRRQEQVAHQRHRQEQLLSRDRPSDPKPSSERDRDRDRDRDRDRDRDRDRDRDRDRERARDREREAERRNREREREEESKARERARIEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSHELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03010 697 MobiDBLite consensus disorder prediction 30 136 - -
Cca11g03010 697 CDD SF2_C_DEAD 515 644 - -
Cca11g03010 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 503 IPR014001 -
Cca11g03010 697 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 85 690 - -
Cca11g03010 697 SMART ultradead3 296 518 IPR014001 -
Cca11g03010 697 PANTHER - 85 690 - -
Cca11g03010 697 MobiDBLite consensus disorder prediction 665 697 - -
Cca11g03010 697 Gene3D - 238 507 IPR027417 -
Cca11g03010 697 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 277 305 IPR014014 GO:0003724
Cca11g03010 697 Pfam DEAD/DEAH box helicase 302 492 IPR011545 GO:0003676|GO:0005524
Cca11g03010 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 656 IPR027417 -
Cca11g03010 697 MobiDBLite consensus disorder prediction 672 697 - -
Cca11g03010 697 Coils Coil 189 215 - -
Cca11g03010 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 674 IPR001650 -
Cca11g03010 697 SMART helicmild6 554 635 IPR001650 -
Cca11g03010 697 Coils Coil 81 125 - -
Cca11g03010 697 CDD DEADc_DDX23 288 504 - -
Cca11g03010 697 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 432 440 IPR000629 -
Cca11g03010 697 Gene3D - 508 695 IPR027417 -
Cca11g03010 697 MobiDBLite consensus disorder prediction 188 226 - -
Cca11g03010 697 MobiDBLite consensus disorder prediction 24 140 - -
Cca11g03010 697 Pfam Helicase conserved C-terminal domain 529 635 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03010 Cca-Chr11 57277216 57279866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03010 275 657 Eukaryotic Initiation Factors Gene Family AT3G19760 31.771 3.62e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03010 K12858 - gmx:100799264 1129.01