Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03009 ATGATGGACTCTAAAACTAGCGCTGTGGCTCCCCCGAAACACCATCAGAAGCTGTCAGGGATCCAAACTGTAGAAACAAAAGACAACAAGCCTAGTTCACTGCAGGCTCAGAAGACAGGCAAACCTGAACTGGCTGCTTCCGAAAGTTCATTGAACTCCATGCAAAGCGCATCCAAGCAGAAAACTGGGGAAACTTCGGAAAACAAGAAGTTGGGAATATCAAAACCAAAGGGGTCTGCTGATTCCTTGAGTAGTAAACGTGGTTCTGGACCTTCTGGTGCTTTTGTACCTGTTATTGACCCAGCATCTGGAGAAGTTGACCGTGCTGGTAATGAGAGCAAAGGCTTGCAGGAAAGCTTTACTGACAAAGAAAGAAAGACATCAGAATATGGAAGTGTGAAGAGCAGTTTTGTTTCTGCTAAAGTTAGCGATGGGGCTAGCAGTCTTGCAAAGACTAGTGGAAGTGCCAAGATTAGTGATCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATATGAGTGATGAAAGTTCTTGTAGCAGTTTTAGTAGTGGCATTAACAAGCCCCACAAGGCAAATGATTTGAGATGGGAAGCTATTCAAGCTATTCGAACTAGGGATGGGTCATTGGGTTTAGGTCATTTCAGACTACTGAAGAGGTTGGGTTGTGGGGATATTGGCAGTGTATATCTCTCTGAATTGAGTGGAACTAAGTGTTATTTTGCAATGAAGGTAATGGACAAAGGATCCCTTGCTAGTCGTAAAAAACTACTCCGTGCCCAGACAGAAAGAGAAATACTGCAGTCGTTGGACCACCCCTTCCTCCCAACTCTGTATACCCATTTTGACACAGAGAAGTTCTCATGTTTGGTAATGGAATTCTGCCCAGGTGGAGACTTGCATACTCTTAGGCAGAGGCAGCCAGGGAAGTATTTTCCCGAGCAAGCAGTGAAATTTTATGTGGCAGAGGTCCTGTTAGCTTTGGAGTACCTCCACATGCTTGGGATTGTCTACCGTGATCTCAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCTGATTTTGACCTTTCCCTCCGTTGTGCTGTTAGTCCAACCCTTGTTAAGACCTCATCAATGGATTCTGAGCCTGTAAGAAAGAATCCTGGATATTGTGTCCAGCCTGCATGTATCGAGCCACCTTCCTGCATCCAGCCATCCTGTGTTGCTCCTACTACATGCTTTTCACCCCGGCTCTTTTCTAGCAAATCAAAGAAGGAACGGAAACCCAAAACTGAAATTGGCAACCAAGTGAGTCCATTACCGGAGCTCATTGCAGAGCCTACTGATGCGCGGTCTATGTCATTTGTTGGAACACACGAGTACTTGGCTCCTGAGATAATCAAGGGTGAGGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGGAAAACACCGTTCAAGGGATCTGGAAACCGTGCTACATTGTTTAATGTTGTAGGCCAGCCTCTGCGGTTTCCAGAAGCACCTGTTGTAAGTTTTGCTGCTAGGGATCTTATAAGGGGGTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGTGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGGTGTGCTACCCCGCCAGAGATCCCAAAGCCAGTGGAGTTTGAGAAGATACCTTCCCCAGCTTCATCAGCCAGCGAAAAGGCTGTACATCATATGTCAATACCTAATCAGAAAGGTTCTGATAATTACCTTGAGTTTGATTTCTTCTAG 1857 0.4513 MMDSKTSAVAPPKHHQKLSGIQTVETKDNKPSSLQAQKTGKPELAASESSLNSMQSASKQKTGETSENKKLGISKPKGSADSLSSKRGSGPSGAFVPVIDPASGEVDRAGNESKGLQESFTDKERKTSEYGSVKSSFVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDMSDESSCSSFSSGINKPHKANDLRWEAIQAIRTRDGSLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFDTEKFSCLVMEFCPGGDLHTLRQRQPGKYFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSMDSEPVRKNPGYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKERKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKIPSPASSASEKAVHHMSIPNQKGSDNYLEFDFF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03009 618 Pfam Protein kinase domain 224 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g03009 618 Pfam Protein kinase domain 458 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g03009 618 SMART serkin_6 223 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g03009 618 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 618 - -
Cca11g03009 618 MobiDBLite consensus disorder prediction 22 62 - -
Cca11g03009 618 Gene3D Phosphorylase Kinase; domain 1 215 308 - -
Cca11g03009 618 PANTHER FLIPPASE KINASE 1-RELATED 5 618 - -
Cca11g03009 618 MobiDBLite consensus disorder prediction 1 128 - -
Cca11g03009 618 ProSiteProfiles Protein kinase domain profile. 223 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g03009 618 CDD STKc_phototropin_like 222 585 - -
Cca11g03009 618 SUPERFAMILY Protein kinase-like (PK-like) 203 594 IPR011009 -
Cca11g03009 618 Gene3D Transferase(Phosphotransferase) domain 1 309 578 - -
Cca11g03009 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03009 Cca-Chr11 57269791 57273960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03009 118 618 AGC Kinase Gene Family AT5G47750 84.095 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca11g03009 Pkinase 4.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03009 K08286 - gmx:100798088 1019.61