Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03008 ATGTCATCAACAAGATCATGGGACCATGATGAGTGCATGCGCTACGATACAGATGAAGAAAGCTCGATCTGCGGTTGCGGTTTTATAGGGTTCAAGAGAAACCAAGTGATAGATTGCAGCCTCAGCCAGAGTGAGATAGAAGAAGATTCAGAAGAGTTGTTTGAGATCAATCTGAATAAGGAGCCTTTGGCTTTGGATACAATAAGAGAAGACTGCGAGAGCACCGTGTTCTCTCTTGACATTAACAAGGCCAAAGATGTTGTTTATGTGGCAGTTGGCAACGACGGAGATTCAAGCATGGAAGCTCTTTCATGGGCCTTGAAGCATGCCGTGACACCCTCGGCCACCGTTTGTCTCCTACACGTTTTCCCTCAAGTCAACCTCATCCCAAGTCCATTGGGAAAAATTCCAAGGAGTCACGTAAATCTAGAGTATGTTAACATGCACTTGACACAAGAGAGAGGCAAGAGGAAATTACTCCTTCAAAAGTTCATTGACCTCTGCGTTGATTCCAAGGTTAAGGTGGATATGATGCTTATTGAGGGTGACAACATTGCTAAAGCCATCATGAACCTTATTGGAAATCTTAATATAAGGAAATTGGTGGTTGGAATTGGCAAGTCTAATTTAAGAAAATCTATGAGTAGAAGGCAAAATGCCATAGCGGCCAAGGTATTAAAAAATGCACAGGAAAGCTGTGACATAAAAATCATATGCGAAGGAAGAGAAGTGATCGACCAGATGATTTGA 750 0.424 MSSTRSWDHDECMRYDTDEESSICGCGFIGFKRNQVIDCSLSQSEIEEDSEELFEINLNKEPLALDTIREDCESTVFSLDINKAKDVVYVAVGNDGDSSMEALSWALKHAVTPSATVCLLHVFPQVNLIPSPLGKIPRSHVNLEYVNMHLTQERGKRKLLLQKFIDLCVDSKVKVDMMLIEGDNIAKAIMNLIGNLNIRKLVVGIGKSNLRKSMSRRQNAIAAKVLKNAQESCDIKIICEGREVIDQMI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03008 249 CDD STK_N 87 241 - -
Cca11g03008 249 Gene3D HUPs 81 237 IPR014729 -
Cca11g03008 249 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 8 249 - -
Cca11g03008 249 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 8 249 - -
Cca11g03008 249 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 94 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03008 Cca-Chr11 57266567 57268404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03008 88 244 U-box Gene Family AT5G65500 34.356 4.99e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03008 - - ccaj:109811414 481.1