Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03003 ATGATTCATTATAATATAATGTATCAGACAGCGAAGACCAAGGTCATTAATTGTTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCATTCTGACAGAAACAGAACCTTTGCGAGTTCTAAATTTGGAAGTATTTGATAAAGATCTTTGGAAAGCTGATGACAAGATGGGAAATACTTGCATCAACCTTCAGCCATTAATCTCTGCATCTAGATTAAGAGATATTTTAAAGGTTTTTTCTGGTGAGACAACATTGAGGAAGGTCACGCCTGATAGTGAAAATTGTCTTGCACGTGAAAGCAGCATCAATTGCGTTAATGGTGAAGTGGTACAAAATGTCTGGTTAAGGCTTCGTGGGGTTGAGTCTGGGGAGCTACAATTGACGATCAAGTTGATCAATTCTTCTGCTTCCTCAATGTAG 423 0.3806 MIHYNIMYQTAKTKVINCCLNPVWNEELNFILTETEPLRVLNLEVFDKDLWKADDKMGNTCINLQPLISASRLRDILKVFSGETTLRKVTPDSENCLARESSINCVNGEVVQNVWLRLRGVESGELQLTIKLINSSASSM 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03003 140 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 11 6 137 - -
Cca11g03003 140 Gene3D C2 domain 2 139 IPR035892 -
Cca11g03003 140 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 6 137 IPR044562 -
Cca11g03003 140 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 134 IPR035892 -
Cca11g03003 140 Pfam C2 domain 9 73 IPR000008 -
Cca11g03003 140 ProSiteProfiles C2 domain profile. 1 77 IPR000008 -
Cca11g03003 140 SMART C2_3c 3 76 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03003 Cca-Chr11 57234427 57236374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03003 12 137 C2H2 Transcription Factor Family AT1G70790 37.795 3.08e-25 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03003 - - gmx:100798217 230.335