Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g03001 ATGGACACTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCTCCTCTGCCTCTGGGTTGAAGCTGTCAGTGTCAGATATGAACAACATGAGAGCAGAGAACAACAACAACCACACAGGAGAGGATAACGAGTGCACGGTGAGGGAGCAAGACAGGTTCATGCCAATCGCAAACGTGATAAGGATCATGCGCAAGATTCTCCCTCCACATGCAAAAATCTCCGATGATGCAAAGGAAACAATCCAAGAGTGTGTGTCCGAGTACATCAGCTTCATCACTGGGGAAGCGAACGAGCGTTGCCAGAGGGAGCAACGCAAGACGATCACTGCTGAGGACGTGCTTTGGGCCATGAGCAAGCTCGGATTCGATGACTACATCGAACCACTCACCATGTACCTTCACCGCTACCGTGAACTCGAGGGTGACCGAACCTCCATGAGGGGTGAACCACTGGGGAAGAGAACCGTTGAATACGCCACTCTTGGCGTCGCCACTGCTTTTGTGCCACCACCCTTTCACCCCAATGGATACTTCAGTGCTGCCATGGGGTCCTACGTTAGGGATGCACATGCAAACAATGCTGCTTCCTCTCATCACCCTGGAATCTCAAACGCTGAACCAAATGGACGCTCCATGTAG 642 0.5249 MDTGGFHGYRKLPNTSSASGLKLSVSDMNNMRAENNNNHTGEDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLGVATAFVPPPFHPNGYFSAAMGSYVRDAHANNAASSHHPGISNAEPNGRSM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g03001 213 ProSitePatterns NF-YB/HAP3 subunit signature. 85 101 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca11g03001 213 SUPERFAMILY Histone-fold 51 150 IPR009072 GO:0046982
Cca11g03001 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 163 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca11g03001 213 Gene3D Histone, subunit A 41 159 IPR009072 GO:0046982
Cca11g03001 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 118 IPR003958 -
Cca11g03001 213 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Cca11g03001 213 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Cca11g03001 213 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Cca11g03001 213 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g03001 Cca-Chr11 57199785 57202165 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g03001 1 144 CCAAT-HAP3 Transcription Factor Family AT5G47670 74.342 6.79e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca11g03001 CBFD_NFYB_HMF 5.8e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g03001 K08065 - gmx:100800011 337.421