Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02999 ATGGCTGAATCTGACAACGAATCAGGAGGTGGAAACAATGAATTGGGAGGGTGCAGAGAGCAGGACAGGCTCCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGTGTTACCAGGCAACGCCAAGATTTCGAAAGAAGCAAAAGAGACGATGCAAGAGTGTGTGTCAGAGTTCATCAGCTTCGTGACAGGGGAGGCATCAGACAAGTGCCAGAAAGAGAAGAGAAAGACAATCAACGGTGATGATCTTCTGTGGGCCATGACCTCACTCGGCTTTGAAGACTATGCTGAGCCCCTCAAGGCTTACCTCCACAAGTACAGGGAGATCGAAGGGGAAAAGACTGCTATGATTGGGAGGCATCAACATGCTACTACTGCTTTTTATGCAAACCCACTATAA 402 0.4851 MAESDNESGGGNNELGGCREQDRLLPIANVSRIMKKVLPGNAKISKEAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTSLGFEDYAEPLKAYLHKYREIEGEKTAMIGRHQHATTAFYANPL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02999 133 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cca11g02999 133 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cca11g02999 133 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cca11g02999 133 SUPERFAMILY Histone-fold 21 124 IPR009072 GO:0046982
Cca11g02999 133 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 123 - -
Cca11g02999 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cca11g02999 133 Gene3D Histone, subunit A 15 128 IPR009072 GO:0046982
Cca11g02999 133 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca11g02999 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02999 Cca-Chr11 57175323 57176393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02999 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.226 6.73e-68 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca11g02999 CBFD_NFYB_HMF 4.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02999 K08065 - gmx:100305641 205.297