Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02997 ATGGGAAATGTGAACGCCACTCGTTCAGAACAAGCAGAATCTTCTGCAACTCATGAGAACGCCATGCCTACTCACTCCCCATTCATCTTCACTCCTCAGGTTCCGGTGCTTCCACTACAAAGAGCTGATGAGATGCATGTTCCGAGTTCAGGGTATGCAGATATGTATGCTGAACCAGGAATTCCAACAATGATTACTTGGAGTTATGATGGAAAGGAAGTAGCAGTTGAGGGATCGTGGGATAATTGGAAAACAAGATTTGTTGTCGACGGACGAAAGAGGTACACTCCAGACTCTCCTTGGGCACAAGATGATGctggcaatgcttacaacatcttggacttacagGATTATGTTCCTGAAGACATAGAAAGCATTTCTAGTTTTGAGCCTCCTCAATCACCAGACTCGAGTTATGATAACTCACAACTTAGTTCTGAGGATTATGGCAAGGAGCCACCATTAGTTCCTCCACTCTTGCAAATGACAGTGCTAAACGTGCCAGCAACAAATATGGAAATCCAACCTCCTAGGTCAAGACCTCAACATGGAGTGCTGAATCATCTTTACACGCAGAAAGGAAAGAGCATTCCTTCAGTGGTTGGCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTATAAGTCGTTGCGAGTTGAACCATGA 681 0.4273 MGNVNATRSEQAESSATHENAMPTHSPFIFTPQVPVLPLQRADEMHVPSSGYADMYAEPGIPTMITWSYDGKEVAVEGSWDNWKTRFVVDGRKRYTPDSPWAQDDAGNAYNILDLQDYVPEDIESISSFEPPQSPDSSYDNSQLSSEDYGKEPPLVPPLLQMTVLNVPATNMEIQPPRSRPQHGVLNHLYTQKGKSIPSVVGLGTTHRFLAKYVTVVLYKSLRVEP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02997 226 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 11 86 IPR043554 -
Cca11g02997 226 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 86 223 IPR043554 -
Cca11g02997 226 SUPERFAMILY E set domains 60 122 IPR014756 -
Cca11g02997 226 CDD E_set_AMPKbeta_like_N 62 114 - -
Cca11g02997 226 Gene3D - 125 222 - -
Cca11g02997 226 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 11 86 - -
Cca11g02997 226 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 86 223 - -
Cca11g02997 226 MobiDBLite consensus disorder prediction 1 25 - -
Cca11g02997 226 MobiDBLite consensus disorder prediction 126 152 - -
Cca11g02997 226 SUPERFAMILY AMPKBI-like 119 221 IPR037256 -
Cca11g02997 226 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 151 220 IPR006828 GO:0005515
Cca11g02997 226 Pfam Glycogen recognition site of AMP-activated protein kinase 61 85 IPR032640 -
Cca11g02997 226 MobiDBLite consensus disorder prediction 127 148 - -
Cca11g02997 226 SMART AMPKBI_2 132 222 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02997 Cca-Chr11 57160389 57162969 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02997 K07199 - gmx:100805688 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02997 11 57160389 57162969 Cca08g01988 08 52696084 52698271 PCT