Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02989 ATGGGTAGTATTGATGAGAGTCGACAATCATTACTTTCAGAATCAAGAGATAATTCTCTTCTGAATGAGAAAAATGACCTCCAAAGGGGAAGGCCTCAACGTGGCAATTCTTCAGAGAAAGAAGAAAATGGTGTCCAAAACCCTTCACACCCTCAACACACAGATGCATTACCACAAGCAGAATTTAATTTCAAGCCAGTGTGCTTATGGCTAGCTGCATACTTAGGTGGAGGAACCCTTTGCTTCCTTCTCGCAAGCAATCATATAAATGGCATAAAAACCAATGGATTTCTTGATGCCATTTACTTCTGTGTTGTGACAATGACAACTGTTGGATATGGAGATCTTGTGCCAGATAGCAATTTGGCAAAACTTCTTGCATGCATTTATGTCTTCAGTGGCATGGCTCTTGTTGGCATAATTCTCAGCAAGGCAGCAGATTACATTGTTGAAAAACAGGAAATATTCTTAGTTAGAACCTTAAGGAAGGGTGAAAATGTTGAAGAGCTTACCAAAGAGGTTGAATCTAACAGAGTTAAATACAAATTCATGCTGACAGCATCCATCTTTTTGGTGCTTATGATTGTAGGAATTATTTTTCTCTATTTTGTTGAAAATCTAGATTTTGTTGATGCCCTCTATTGTGTTTGTTCCACAGTCACTACTTTAGGGTATGGAGATAAGAGCTTCTCAACTACTATTGGTCGTTTCTTTGCTGTGTTCTGGATATTGAGCAGCACCATTTGCTTAGCTCAATCTTTTGCTTATCTTGCTGAACTTTATACTGAAAAAAGACAAAAATCACTCGCAAAAAAAGTTCTTTCACGAAAATTTTCACTCATTGATCTTGAGGCAGCTGATCTTGATGGAGACCATGTTGTCAGTCCTACAGAGTTCGCTTTGTACAAGTTGAAGGAAATGGGAAAGATCAGACAAGAAGATATTTTAGTTGTGATGGATCATTTTAGAAAACTAGATTTTGATCAATCAGGAACCCTGACAGAAGCTGATCTCAGATCATGA 1023 0.3793 MGSIDESRQSLLSESRDNSLLNEKNDLQRGRPQRGNSSEKEENGVQNPSHPQHTDALPQAEFNFKPVCLWLAAYLGGGTLCFLLASNHINGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSNLAKLLACIYVFSGMALVGIILSKAADYIVEKQEIFLVRTLRKGENVEELTKEVESNRVKYKFMLTASIFLVLMIVGIIFLYFVENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRFFAVFWILSSTICLAQSFAYLAELYTEKRQKSLAKKVLSRKFSLIDLEAADLDGDHVVSPTEFALYKLKEMGKIRQEDILVVMDHFRKLDFDQSGTLTEADLRS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02989 340 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 25 337 - -
Cca11g02989 340 PRINTS Two pore domain K+ channel signature 106 134 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca11g02989 340 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca11g02989 340 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 25 337 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca11g02989 340 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Cca11g02989 340 MobiDBLite consensus disorder prediction 1 18 - -
Cca11g02989 340 MobiDBLite consensus disorder prediction 1 56 - -
Cca11g02989 340 Gene3D - 62 155 - -
Cca11g02989 340 ProSiteProfiles EF-hand calcium-binding domain profile. 313 340 IPR002048 GO:0005509
Cca11g02989 340 MobiDBLite consensus disorder prediction 19 38 - -
Cca11g02989 340 Gene3D - 164 271 - -
Cca11g02989 340 SUPERFAMILY EF-hand 284 339 IPR011992 -
Cca11g02989 340 ProSitePatterns EF-hand calcium-binding domain. 287 299 IPR018247 -
Cca11g02989 340 SUPERFAMILY Voltage-gated potassium channels 158 271 - -
Cca11g02989 340 Pfam Ion channel 72 150 IPR013099 -
Cca11g02989 340 Pfam Ion channel 189 261 IPR013099 -
Cca11g02989 340 MobiDBLite consensus disorder prediction 39 56 - -
Cca11g02989 340 SUPERFAMILY Voltage-gated potassium channels 67 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02989 Cca-Chr11 57091758 57093667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02989 46 338 Ion Channels AT5G55630 55.932 1.12e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02989 K05389 - gmx:100799492 532.717