Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02980 ATGCAAACGTCTCAGAAACACCCAAGTTCAGCTGGTGTCCATTTCTATCACCAGCCTGTGCAAGGCATTTACCAAATGTTGCAAAGCAATCTGTGCCATGATAGCAGCAGCCAGGGAACAACTAGCGTTTCTTTTGAAACCTGCAAGGAGCAATACTTTACTCTGGAATCATGCCCTGCACCCACTGCTTTCATGGATTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCCAAGAGGACTCCATTTTCTCCACAAGGTTCTCAGTCATGTTATTCAGACCACCACCAGTCGTCCGACAATGCCTATGGATCCCCGATAAGCGGCTTGTCTAGTGTTGATGACGGGCATGGACTGAAGCACAAACTTAGAGAACTGGAAATTTCATTGTTGGGGCTAGATGAATCTGACATCGTAGACAGTTGTGGCTGCTGCATGGCCAAGGTTGGCCTTCAAGGAGCATCTCAGTTGGCTAAACATGACTGGGATCAGATTGTGGAAAATATTCCCCAACTTGACTTGAAAGGAGTCCTCAAGGTATGTGCACAGGCAGTGTCTGATGATGATATTCCAATAGCAAGAGGCTGGATGGACAATGTATTAGGGAGAATGGTATCAGTTTCTGGAGATCCAATCCAGAGGCTAGGTGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAATCATCAGGGAATCTGATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCCAAGAACTAATGAGTTACATGCACATCCTGTACCAGATTTGCCCGTACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTGAAGAAGCAATGGCAAATGAATCCAGGATCCATATAATTGATTTCCAAATTGCTCAGGGCACTCAGTGGTATTTACTTATACAAGCTCTTGCACATAGGCCTGGAGGACCCCCTTCTCTTCGTGTAACTGGTGTTGATGATTCACAATCGATTCACGCTCGGGGTGGAGGACTTCAGATTGTTGGAGAAAGACTAACAGATTATGCCAGGTCTTGTGGAGTTCCATTTGAATTCCACAGCGCTGCAATATCTGGCTGTGACGTTGTGAGAGGAAATATTGAAATTCGACATGGGGAAGCTCTGGCTGTAAACTTTCCTTATGTTTTGCATCACATGCCAGATGAGAGTGTGAGCACTGAGAATCACAGAGATAGATTGCTGAGGTTTGTTGAAACCCTCGATTATTATACTGCTATGTTTGAATCCATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATTAGCGCAGAGCAGCACTGTGTGGCACGAGACATTGTCAACATGATAGCTTGTGAGGGAGTAGAGAGGGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGATTGAGACTTTCCATGGCTGGATTTAAACAGTGTGCATTTAGTTCTTCAGTGATGGCTGCTACACAAAATCTCCTAAAGGACTTCAATCAAAATTATAGGCTTGAACATAAAGATGGTGCTCTTTATCTTGGCTGGATGCACAGACATATGGCCACCTCTTCTGCTTGGAGAATCTCAAAGCACGTTGTAAATGTCAATACTGAAATTAAAGAAAAACAGACGTCTGTTGTGACTTATTTTCCTCCCTTCGTTCGCGGGGTTTAG 1647 0.4451 MQTSQKHPSSAGVHFYHQPVQGIYQMLQSNLCHDSSSQGTTSVSFETCKEQYFTLESCPAPTAFMDCDDSPSYASVSSKRTPFSPQGSQSCYSDHHQSSDNAYGSPISGLSSVDDGHGLKHKLRELEISLLGLDESDIVDSCGCCMAKVGLQGASQLAKHDWDQIVENIPQLDLKGVLKVCAQAVSDDDIPIARGWMDNVLGRMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEQPTSQELMSYMHILYQICPYWKFAYISANAVIEEAMANESRIHIIDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSQSIHARGGGLQIVGERLTDYARSCGVPFEFHSAAISGCDVVRGNIEIRHGEALAVNFPYVLHHMPDESVSTENHRDRLLRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRLRLSMAGFKQCAFSSSVMAATQNLLKDFNQNYRLEHKDGALYLGWMHRHMATSSAWRISKHVVNVNTEIKEKQTSVVTYFPPFVRGV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02980 548 ProSiteProfiles GRAS family profile. 165 518 IPR005202 -
Cca11g02980 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 403 IPR005202 -
Cca11g02980 548 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 403 - -
Cca11g02980 548 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 401 517 - -
Cca11g02980 548 MobiDBLite consensus disorder prediction 76 107 - -
Cca11g02980 548 Pfam GRAS domain family 177 403 IPR005202 -
Cca11g02980 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 401 517 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02980 Cca-Chr11 57035628 57037460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02980 1 518 GRAS Transcription Factor Family AT4G17230 56.960 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g02980 GRAS 1.1e-64 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02980 - - gmx:100776109 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02980 11 57035628 57037460 Cca08g02007 08 52894489 52898652 PCT