Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02968 ATGTCTGTTATCGAAACCCCCGCCGTCCACCACCGCAGCGGGGGCGCCACCGATCATCACCGTCATCCCTCGAAGCGCAAATTCGACGATGAAGAGGACGAGGATTTGTCAGACTTAGTCTGCGTGAGGATGAGGAAGGACGAGGCGAAGGCGGTGAATTCGTGGTCGGCCTCGGTGCCTCAGCGATCGCACATCCAGTTCTTCGTCCGCATGATGTCCGGCGGAAACACAATCGTTATGCAGGCTTTTCCCGAAGACAGCGTCAAATCGATTCACGAGCGTATCCAGAGCATGAAGGGAATCCCAGTGTTCGAGCAGAGACTCATCTACAGAGGAAAACAGCTTCAGTGGGAGCAGACTCTCTCCGAGTGTTCCATCCAAAACGACGCCAATCTCCAGCTCGTTGGCCGCATGCGCAGCACTGAACATCCTCAGGCTTGGCAGGTTATAAACGACATGGTTTCTCTAGTCTACCGTCTCTGCCGCGGCGAAACCCTTCACGATGCTTCTAAGACTGTCAAGGGTTTAATCACCAATTACTTGAACATGACTCCTAGAATTGATAACGAATCTGCCTCTGGGTACTTTCAGATTTTCATGTCTTCCTCTGCTCCTGCTGTGCTTGTTATGCTCTATGTCTCCCCTTATGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGGCATTTTTTGAGTTCTTGCCGCAATACCTTGTCCAAGGCATTGCACGGGCAGTGCGCCCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTGTAATGACCCTTTGTATCTCTATTGCCGGAGCACTTTTGGGTCCTTGTTGGAAACTTGTGGGATTTCCTATGCTGGTTCAGATGATGTTAAGGGGCTGGTTTTGATTCAAGACATTTTCCCCTTTGTTTGTGAGCTTGCCAATAGCTTGTTGAGGGATTTGGACTTGAGTATGGATTCCCCCATGGCCGCCGGGCCTTTGTCGAACGATGTTGGGGATTTTAACGCCTTCTTACTACCTTTGAGGACTGGAATTAAGGAGCAAAAAACTCTCAAGGATTCTATGGCTCAGGAAAAACGCCGTAAGGATTTCTTGCTCGCTGAAGAGATTGAGTATCTTCATCGGTTGTACATTGAGTTATTGAACAAAATTGATCAGTGCCTTCAAAAAATGGGCCAAAGCTTAGCTGGCCAGAAAATGGAAGGGGATAGTCTTTATCCGGCTTGGTCTCATTATCTTTCAATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGCGCTGAAGAAAAGCTTTGGAACGTTCTGGCGCGGCAAAGAAGTGTGCTCTGTCTGTTAATTGTTCGATATGCGAAGCGAAGTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAATCTAGGAGACATTTGGCCATGATGATGTTCCCGGAGGTGAAAGAAGATTACGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGACGGAATCTTTTGAATACATAGCACGTGCTGAGCCTGAAGCTCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAAGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTCCCTAATCCTGCATCCAAGGTACATCCTCTGCACCTAGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGGATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAACCACATTACTTTAGAAGATATAAGGGATGCAGATCCTTATCTTTATAATAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTAGGACACAGGAAAGTGGTTGAGCTCTGCCCTGGCGGAAAGAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGCTTCGTAACATCCATATCTGAGCAGGTATTACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACACAAGCCTCCAGCAGTTCTTCTTCCAAGGTTTGGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACCGAGTACAATGGCTATAAAGAGACAGATATTCAGATAACTTGGTTTTGGGAGGTATGTACATCCTGCTTTTATTAA 2325 0.4551 MSVIETPAVHHRSGGATDHHRHPSKRKFDDEEDEDLSDLVCVRMRKDEAKAVNSWSASVPQRSHIQFFVRMMSGGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLSECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETLHDASKTVKGLITNYLNMTPRIDNESASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNTLSKALHGQCARVVLEFCKLLRRVGCNDPLYLYCRSTFGSLLETCGISYAGSDDVKGLVLIQDIFPFVCELANSLLRDLDLSMDSPMAAGPLSNDVGDFNAFLLPLRTGIKEQKTLKDSMAQEKRRKDFLLAEEIEYLHRLYIELLNKIDQCLQKMGQSLAGQKMEGDSLYPAWSHYLSILKELYQISKLYDGAEEKLWNVLARQRSVLCLLIVRYAKRSDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPEALHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNHITLEDIRDADPYLYNSCKQILDMDADFIDSDALGLTFVREVEELGHRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVLHFAKGFADILSNTSLQQFFFQGLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQITWFWEVCTSCFY 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02968 774 ProSiteProfiles Ubiquitin domain profile. 65 141 IPR000626 GO:0005515
Cca11g02968 774 SMART hect_3 512 774 IPR000569 GO:0004842
Cca11g02968 774 SUPERFAMILY Hect, E3 ligase catalytic domain 489 770 IPR035983 GO:0004842
Cca11g02968 774 PRINTS Ubiquitin signature 118 139 IPR019956 -
Cca11g02968 774 PRINTS Ubiquitin signature 97 117 IPR019956 -
Cca11g02968 774 PRINTS Ubiquitin signature 76 96 IPR019956 -
Cca11g02968 774 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 51 770 - -
Cca11g02968 774 Pfam Ubiquitin family 68 139 IPR000626 GO:0005515
Cca11g02968 774 Pfam HECT-domain (ubiquitin-transferase) 543 770 IPR000569 GO:0004842
Cca11g02968 774 Gene3D Hect, E3 ligase catalytic domain 737 773 - -
Cca11g02968 774 ProSiteProfiles HECT domain profile. 514 768 IPR000569 GO:0004842
Cca11g02968 774 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 51 770 - -
Cca11g02968 774 SMART ubq_7 65 137 IPR000626 GO:0005515
Cca11g02968 774 MobiDBLite consensus disorder prediction 1 31 - -
Cca11g02968 774 Gene3D - 59 159 - -
Cca11g02968 774 Gene3D Hect, E3 ligase catalytic domain 614 696 - -
Cca11g02968 774 SUPERFAMILY Ubiquitin-like 65 153 IPR029071 -
Cca11g02968 774 Gene3D Hect, E3 ligase catalytic domains 494 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02968 Cca-Chr11 56937828 56946906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02968 65 139 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 1.46e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02968 - - gmx:100789233 1399.42