Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02957 ATGCACTTTGCTAGAGCTTCAATGGGGGGCTCATGTTTCCATGTGCTTCGTTTGAGGAGGTTCAAGAGTAAGCCTCTGCCAGAACCCTCTTCATCTTCCAAGACCCGGTTAGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGATAGCTTGGAATCATGGTCCATGATATTGGATTCTGAGAATGTGGAGACATGGGAAGCATCAAAGGAGGATCAAGAAGAATGGACCGCTGATCTTTCACAACTTTTCATAGGTAACAAGTTTGCATCCGGTGCTCACAGCAGGATTTACCGCGGAATTTACAAGCAGAGAGCTGTTGCTGTCAAAATGGTGAGGATTCCCACACAGGATGAGGAGAGAAGAGCCTTGCTTGAACAGCAATTCAAGTCTGAAGTGGCTTTACTTTCAAGTCTCTTTCATCCTAACATAGTGCAGTTTATTGCAGCTTGTAAAAAACCGCCAGTATACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAGCCTTACTCTCTTTCAATAGAAACTATACTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCATTCGCAAGGTGTGATTCACAGAGATCTCAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTTGAAACAAGGTGTAGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCACCAGAGATGATTAAGGAAAAACCTTATACTCGTAAAGTTGACGTCTACAGTTTTGGAATTGTGCTTTGGGAACTCACAACTGCTCTACTTCCATTCCAAGGAATGACTCCTGTGCAAGCTGCTTTTGCTGTTGCTGAGAAGAATGAAAGGCCTCCACTGCCTGCTAGTTGTCAACCAGCACTTGCACATCTGATAAAGCGTTGTTGGTCAGCAAACCCTTCGAAGAGGCCAGATTTCAGTGACATTGTGTGCACTCTGGAGAAGTACGATGAGTGTGTGAAGGAGGGCTTACCTCTGACTCATCATTCTGGTCTAGTCAGCAAAAATGTCATCATTGAACGCTTAAAAGGTTGCGTCTCTATGACCTCTTCCATACCTGTACAGGCTTGA 1146 0.4398 MHFARASMGGSCFHVLRLRRFKSKPLPEPSSSSKTRLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRALLEQQFKSEVALLSSLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNVIIERLKGCVSMTSSIPVQA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02957 381 SUPERFAMILY Protein kinase-like (PK-like) 62 338 IPR011009 -
Cca11g02957 381 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 17 369 - -
Cca11g02957 381 SMART serkin_6 84 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02957 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cca11g02957 381 Gene3D Transferase(Phosphotransferase) domain 1 167 354 - -
Cca11g02957 381 Pfam Protein tyrosine and serine/threonine kinase 86 337 IPR001245 GO:0004672|GO:0006468
Cca11g02957 381 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
Cca11g02957 381 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Cca11g02957 381 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Cca11g02957 381 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672|GO:0006468
Cca11g02957 381 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Cca11g02957 381 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Cca11g02957 381 ProSiteProfiles Protein kinase domain profile. 84 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02957 381 CDD STKc_MAP3K-like 91 335 - -
Cca11g02957 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02957 Cca-Chr11 56861746 56866553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02957 8 372 MAP Kinase Kinase Kinase AT1G62400 84.267 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca11g02957 PK_Tyr_Ser-Thr 3.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02957 - - gmx:100799437 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02957 11 56861746 56866553 Cca08g02032 08 53213605 53219957 PCT