Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02950 ATGGAATCGATGGGCAGCGAAAGAGAAGCAAGAACCATTCTGGGTCTGTTAACGGACCCAATGGAGGGAGCCCAACGGAGGAGTGTGTCGCTGATGCGGCTGTTGGAGGAGACGGAGAATGCGGAGAAAGGAGGAGGCGAAGTGGGGAATGATTCAGTGTGCTGCGTGTGCATGGGGAAAAAGAAAGGCGCGGCTTTTATCCCCTGTGGACACACTTTCTGTAGGGTGTGTTCGAGGGAGCTTTGGTTGAAGAGAGGTCTGCCCCCATCACCTTGGGAGGCATAG 285 0.5509 MESMGSEREARTILGLLTDPMEGAQRRSVSLMRLLEETENAEKGGGEVGNDSVCCVCMGKKKGAAFIPCGHTFCRVCSRELWLKRGLPPSPWEA 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02950 94 Pfam Zinc finger, C3HC4 type (RING finger) 51 81 - -
Cca11g02950 94 Coils Coil 21 41 - -
Cca11g02950 94 CDD RING-HC 54 88 - -
Cca11g02950 94 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 88 IPR013083 -
Cca11g02950 94 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 89 - -
Cca11g02950 94 SUPERFAMILY RING/U-box 49 86 - -
Cca11g02950 94 PANTHER OS01G0917900 PROTEIN 23 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02950 Cca-Chr11 56803761 56806763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02950 27 89 C3H Transcription Factor Family AT4G22250 65.789 2.20e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02950 - - gmx:106799504 114.005