Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02949 ATGAAAGGCTCAAAGCAGCACCAGCTCCAACAAAGAGGATGCAAGGCCTTGTGTTGCAGTTGCAGGCTCAGTGTTTCTTCCTCTGAGGAAGCAGAAAGCTCATCAGCTTCTGATAGGTTCCCTTCTGTTTCAAGCCTTGCACATGCCATGGTGCAAGAGAGACTTGACCAAATGATTAGAGAAAAAATGGAAGCAAGACATGCAGAGAGAAGAAGGCAACAAAGCAGAGAAGGGACCAAGTTTGTTGTAATGGTAGCTATGGAGAGGAGTTCTTGTGATCCAAGAGAGGATTTTAGAGAGTCCATGACGGAGATGATAACTGCCAACCGCCTTCAAGATGCCAAAGATCTTCGAAGTCTATTGAACTACTATATCTCCATGAACTCTGATGAGTACCATACTCTTATACTTGAGGTTTTTCATGAGGCAGAAGAGACATGGCTTATAGGGTTGTTGCTCACTTGCCCAAAACAAGCAGAAAACTATCCAGAAATTGCTTGA 501 0.4391 MKGSKQHQLQQRGCKALCCSCRLSVSSSEEAESSSASDRFPSVSSLAHAMVQERLDQMIREKMEARHAERRRQQSREGTKFVVMVAMERSSCDPREDFRESMTEMITANRLQDAKDLRSLLNYYISMNSDEYHTLILEVFHEAEETWLIGLLLTCPKQAENYPEIA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02949 166 Pfam Transcriptional repressor, ovate 91 142 IPR006458 -
Cca11g02949 166 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 85 142 IPR006458 -
Cca11g02949 166 PANTHER TRANSCRIPTION REPRESSOR-RELATED 10 143 - -
Cca11g02949 166 ProSiteProfiles OVATE domain profile. 85 146 IPR006458 -
Cca11g02949 166 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 10 143 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02949 Cca-Chr11 56798921 56801998 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca11g02949 Ovate 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02949 - - gmx:102663136 230.72