Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02944 ATGGAGGGTGGTTCTAACGAGGCTTCTAGTGTGATGGGCTTTGGAGAGAATACAAGGAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGCTGGTCATCATCCATTAaatcctaatcttaataatcccaatcccaatcctaatGAATACACAAACACGAACTCTCTCTTCCTTCCCATGCCTTGTACTAATAACAATCACCGTACAAACCGCAATACCACCGGCAACTCCTCTATCTTTCAGGACAATAACCATAACACCAACGCTGCGTTAGGGTATTTCATGGAGATCCACCACCACAACAACAACAACGATGGAAGCTCCTCTTCCTCTTCTTCCGCTGTCAAAGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTATATCAATTGTCAAAAGGTTGGGGCTCCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCTGCAGTGACAATGGCAGGTGGCACAGCTAGCATAGGCGAGGATCCAGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATTAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACTATTTCTTCTTCCGACACCGCATGTAATGAAGGTACTGATAGGAATATATCATCTGAAGATGTTGATGTACACAACATAATAGATCCTCAGGCAGAGGACCAAGAATTAAAAGGCCAACTCTTGCGCAAGTACCGTGGATACCTAGGCAGTTTGAAGCAGGAATTCACAAAGAAGAGGAAAAAAGGCAAACTCCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCTCTTGCGGAATCAACAGGGCTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGGAAAAGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGCTGGATCCAAGCAATCCACGTTACTACATGGAAAATGTTCTGGCCAATCATTTTCCCATGGATCTCTCCCATACAATGCTCTAA 1116 0.4382 MEGGSNEASSVMGFGENTRSSGVCPMMMMPLVTSHHAGHHPLNPNLNNPNPNPNEYTNTNSLFLPMPCTNNNHRTNRNTTGNSSIFQDNNHNTNAALGYFMEIHHHNNNNDGSSSSSSSAVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVARLEEACASAAVTMAGGTASIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSDTACNEGTDRNISSEDVDVHNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVLDPSNPRYYMENVLANHFPMDLSHTML 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02944 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Cca11g02944 371 Gene3D - 278 340 - -
Cca11g02944 371 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Cca11g02944 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Cca11g02944 371 MobiDBLite consensus disorder prediction 40 59 - -
Cca11g02944 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Cca11g02944 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Cca11g02944 371 PANTHER - 3 360 - -
Cca11g02944 371 SUPERFAMILY Homeodomain-like 275 348 IPR009057 -
Cca11g02944 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Cca11g02944 371 MobiDBLite consensus disorder prediction 35 59 - -
Cca11g02944 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Cca11g02944 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Cca11g02944 371 Pfam ELK domain 253 273 IPR005539 GO:0003677
Cca11g02944 371 SMART KNOX2_2 168 219 IPR005541 GO:0003677|GO:0005634
Cca11g02944 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 360 - -
Cca11g02944 371 Pfam KNOX2 domain 171 218 IPR005541 GO:0003677|GO:0005634
Cca11g02944 371 Pfam KNOX1 domain 120 159 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02944 Cca-Chr11 56747749 56752313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02944 100 371 Homeobox Transcription Factor Family AT1G62360 75.610 1.67e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca11g02944 KNOX2 4.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02944 - - gmx:100127401 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02944 11 56747749 56752313 Cca08g02053 08 53512394 53520560 PCT