Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02940 ATGGAGGTTGCTCTTCAAAGAAGACAAGGGCAACCGAAACAACACTCTGAGGATAAGCAGGAATTCAGTAGATGCTCTAAAATTAATGGAAAGAGAAAGGCAACTAACCTGCCATCCAAGAAAGATGAGACAAATAAGCTTACTTCCCCAAAAAGAAAAAGGAAATCCGAAGATGATCTATTGATTGACGACTTGGAAGATGAAGAAATGCTCACTCTTATAAAGTCAAAGAGCAGGAGGATAGCTAAAAGAATGGACAATGTGATGGATGTTGGACAAAATGTCCGAATATGTCATCAATGCTTGAATAAGGATAGGATATATTATGTGTCATGTACTAAATGCCCAAAGATGTACTGTATGCGATGTCTGGATAAATGGTACCCTGACATGTCAGTAGAAGAAGTTGCTACAAGTTGTCCATTTTGCCGCAAAAATTGCAATTGTAATGCCTGCTTATGTTCAAGAGGAATGATTAAGACATCTAACAGGGACATCACCGATTATGAAAAAGCTCAGTATCTGCAATATATGATTAACTTACTCATACCATTTTTGAAACAAATTTGTCGTGGACAAAGTCAAGAGGAGAAGATTGAATCTAACATACAAGGAAAATCTTCTTTCGAGATCGAGATACCCCAAAGTCTTTGTGGCGACGATGAACGTGTCTATTGTGACCACTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGCCCCAATTGTTCCTTTGAACTCTGCCTCAGTTGTTGTCAAGAAATACGTGATGGAAACATTGCACCACGGCCTGAGTTGAAGTTCCAATATGTGAATAGGGGCTATGAATATATGCATGGTGGTGACCCTCTACCTGTGTATTGTGATTTAGAGACATATGAAGGTCATATTAAGTCATATTCTGTGTGGAATGCTAAGAGTGATGGAAGCATTAGTTGTGCGCCAAAGGAGTTGGGGGGTTGTGGTAGTGCTGTATTGGAGCTGAGACGCATCCTCCCACGTTGGTGGGTATCTGACTTGGAAGCCAAAGCCCGCAGTACGCTGGAAATTTGCGAAATTGAGCTCCCAAGCCTTCGACAAAAAGCAGTATCAAGCTACACCTCTATGAGAAAGGATGCTCTTAGAGGCATAAATGACAATGACATAGAGATGTTGATTTTCCAAAACCATTGGGCTAATGGTGAACCAATTATAGTTCGTGATGCCCTTAAACAGGGGACTGGTCTGAGCTGGGAGCCAATGGTAATGTGGCGAGCATTATGTGAAAATATGGTTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTGATACCCGCACATTCTTTAAAGGTTATATAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCCGATAAATTTGAAGATCTTTTGCCCCGCCACTGTGACGAGTTTATTCGTTCCTTGCCATTTCAAGAGTACACTGATCCTCGCGCTGGAATTCTCAATGTTGCTGCGAAGTTACCAGCTCATGTCATCAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAGCTTGGCAGAGGAGACTCTGTAACAAAGCTTCATTGTGATATGTCAGATGCGGTAAATATTTTGACCCATACAGCAGAGGTGATGTTAACCGATGAGCAGCACTTTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACAGTATGCTCATGAGATGATTGCTGACATCCGGAATGGTCGACTCTTCAAAGACATCAAAAAACGCAAAGAAAATAAGGAAGTTTTAGAACCCAAAGACATGGGGAAGCGACCCATTGAAATTAATGGAAAGATCTTTCCAAATGAAGTTCCTGAGGGGGTCACTTCTACTACAGGGAATGAATCAATGGAAACAGGCGGTGCCCTATGGGATATATTTCGGAGAGAGGATTCTGAAAAGTTAGAGACATATCTTAGGAAACACTCAAAAGAATTTAGACATACTTTTTGCTCTTCAGTTGAACAGGTTGTACATCCAATTCACGACCAATGCTTTTATTTGACATTGGAGCACAAGAAGAAGCTGAAGGAGAAGTTTGGTGTAGAACCATGGACTTTTGAACAAAAACTTGGGGAGGCAGTATTTATTCCTGCGGGATGCCCGCATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCCGTAGACTTTGTGTCCCCTGAAAATATCCATGAGTGTCTACGTTTGACCAATGAGTTCCGCCAGCTTCCCAAGAACCACAGAGCTAGAGAAGATAAACTTGAGTGGTTTAATCCTTGA 2367 0.4115 MEVALQRRQGQPKQHSEDKQEFSRCSKINGKRKATNLPSKKDETNKLTSPKRKRKSEDDLLIDDLEDEEMLTLIKSKSRRIAKRMDNVMDVGQNVRICHQCLNKDRIYYVSCTKCPKMYCMRCLDKWYPDMSVEEVATSCPFCRKNCNCNACLCSRGMIKTSNRDITDYEKAQYLQYMINLLIPFLKQICRGQSQEEKIESNIQGKSSFEIEIPQSLCGDDERVYCDHCATSIIDLHRSCPNCSFELCLSCCQEIRDGNIAPRPELKFQYVNRGYEYMHGGDPLPVYCDLETYEGHIKSYSVWNAKSDGSISCAPKELGGCGSAVLELRRILPRWWVSDLEAKARSTLEICEIELPSLRQKAVSSYTSMRKDALRGINDNDIEMLIFQNHWANGEPIIVRDALKQGTGLSWEPMVMWRALCENMVSDISSKMSEVKAIDCLANCEVEIDTRTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNVAAKLPAHVIKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHFIISKLKEAHKAQDEREQYAHEMIADIRNGRLFKDIKKRKENKEVLEPKDMGKRPIEINGKIFPNEVPEGVTSTTGNESMETGGALWDIFRREDSEKLETYLRKHSKEFRHTFCSSVEQVVHPIHDQCFYLTLEHKKKLKEKFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHRAREDKLEWFNP 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02940 788 Pfam JmjC domain, hydroxylase 650 753 IPR003347 -
Cca11g02940 788 Gene3D Cupin 371 779 - -
Cca11g02940 788 MobiDBLite consensus disorder prediction 1 57 - -
Cca11g02940 788 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 94 162 IPR018866 -
Cca11g02940 788 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 10 785 - -
Cca11g02940 788 SUPERFAMILY Clavaminate synthase-like 381 785 - -
Cca11g02940 788 SMART cupin_9 486 770 IPR003347 -
Cca11g02940 788 MobiDBLite consensus disorder prediction 35 57 - -
Cca11g02940 788 ProSiteProfiles JmjC domain profile. 505 770 IPR003347 -
Cca11g02940 788 MobiDBLite consensus disorder prediction 11 28 - -
Cca11g02940 788 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 785 IPR045109 GO:0032454|GO:0033169
Cca11g02940 788 ProSiteProfiles Zinc finger RING-type profile. 98 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02940 Cca-Chr11 56693840 56699320 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca11g02940 JmjC 3.9e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02940 K15601 K21989 gmx:100797860 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02940 11 56693840 56699320 Cca08g02060 08 53600094 53604013 PCT